LOC111193793


Basic Information

Item Value
gene id LOC111193793
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 43442852 ~ 43449854 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002650731.1
GCGAGCGGATCAGGCGGCTGGATGGAAGAAGCTGCCGCCATTTTGAGGCGCTCTGTGGAGAGTGAGCCGGAGCAGCAGCGCTAGTGCAGTAATAGGTTgcaatgattgtgaccggtgatgtctggttagaattgtccGTGGCTGGAATAGACAAGCCAATccggcagaaatcacatccacattcagagCAGGAGACCCCACTCGCCTATTTCGCAGGAAGTGCTTCTGACTGCAATTCCAGCTGACCAATGAGAATCCTACCTGGTGTGATTGGGGGAGGAGCTAACCTTTTAAATGCAGGAATTCAAGATGGCTGTTGGAGAGTATGGTATGCTGCCCTTGTGCTGTTTTAAATAGCTTTTGTTAGGACTAGTTAATTGTGTATTTTGCCAGCATGTTTCCTAAGTTTGtttcaataatatttatttaactgctttattttaggaaagtgcttttctttttagatattttacctGTGGTTGTTAACTTTGTTTTGTGAGAGGTTTGTTTGTTCCACATGTGGTTTCAAGCAGGCTAGAAAGAACTCTGCTTGGTTTAGTTTTACTAGCTTAGTGGACTAAAGCACCATGTATTTTGGATATTTGCCAGGAAAGTATATGGTAGttagctttttctttttgttctctAGATAATTGTAGGTAATAATGATTTTTGTCCAGTGTTCCAGTTTGATTGCTTATTTGGGTACTTTGGAAAGACAGCAAGTTTTAGAATGGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002650731.1 True 739 lncRNA 0.42 3 43442852 43449854

Neighbor

gene id symbol gene type direction distance location
dock7 dock7 coding downstream 615921 42745620 ~ 42826931 (-)
kank4 kank4,LOC107731645,LOC107704518,LOC107692389,LOC107556542,LOC107591186 coding downstream 714445 42657958 ~ 42728407 (-)
LOC107197605 NA coding downstream 786771 42652533 ~ 42656081 (-)
LOC103033504 NA coding downstream 1061155 42361736 ~ 42381697 (-)
LOC103030126 LOC103030126,LOC108440237,LOC108271568,LOC107692395 coding downstream 1107728 42276265 ~ 42335124 (-)
jak1 jak1,LOC107556544,LOC107659055,LOC107739023,LOC107709186 coding upstream 117875 43567729 ~ 43619228 (-)
G117954 NA non-coding downstream 4517 43438122 ~ 43438335 (-)
G117811 NA non-coding downstream 210278 43226554 ~ 43232574 (-)
G117662 NA non-coding downstream 1006315 42368505 ~ 42436537 (-)
G117660 NA non-coding downstream 1091657 42350120 ~ 42351195 (-)
G117623 NA non-coding downstream 1225836 42216458 ~ 42217016 (-)
G117963 NA non-coding upstream 137648 43587502 ~ 43850446 (-)
G118011 NA non-coding upstream 324023 43773877 ~ 43775458 (-)
G118019 NA non-coding upstream 434335 43884189 ~ 43886064 (-)
G118041 NA non-coding upstream 688915 44138769 ~ 44141095 (-)
LOC103041916 LOC107758363,LOC107684070,LOC107692412 other downstream 2425038 40816133 ~ 41017814 (-)
LOC103034527 NA other downstream 2673170 40731296 ~ 40769682 (-)
LOC103040080 LOC108440156 other downstream 3078892 40360319 ~ 40363960 (-)
LOC103028549 NA other downstream 4151824 39284217 ~ 39291028 (-)
LOC103032356 LOC108441420,LOC108272184,LOC107582737,LOC107726519 other downstream 4479158 38953162 ~ 38963694 (-)

Expression


Co-expression Network