trnaf-gaa_1



Basic Information


Item Value
gene id trnaf-gaa_1
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035909.1
NCBI id CM008312.1
chromosome length 44161018
location 34427468 ~ 34427540 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>trnaf-gaa_1
GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGGTTTCGGCA

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
trnaf-gaa_1 True 73 tRNA 0.53 1 34427468 34427540

Neighbor


gene id symbol gene type direction distance location
LOC103037850 LOC108436275,LOC108271600,LOC105912153,LOC101066286 coding upstream 2158 34407391 ~ 34425310 (+)
LOC103038494 LOC108436254,LOC108271561 coding upstream 27329 34392896 ~ 34400139 (+)
LOC103038804 LOC103038804,LOC108436276,LOC107714251,LOC106565806,LOC107654258,LOC108272120,LOC106582918 coding upstream 52056 34368989 ~ 34375412 (+)
LOC103039118 NA coding upstream 59853 34361617 ~ 34367615 (+)
rae1 rae1 coding upstream 99006 34321952 ~ 34328462 (+)
LOC103037522 ip6k2a,LOC108436274,LOC107657877,LOC107713495,LOC107666997,LOC108272115,LOC107750247 coding downstream 58779 34486319 ~ 34492427 (+)
LOC103036990 sec61a1,LOC103036990,LOC108436273,LOC103023094,LOC102228108,LOC108440718,LOC106518493 coding downstream 82743 34510283 ~ 34515809 (+)
emc3 emc3,LOC107667035,LOC107584459,LOC101173295 coding downstream 91250 34518790 ~ 34524086 (+)
usp4 usp4,LOC106583188 coding downstream 97727 34525267 ~ 34538572 (+)
fancd2 fancd2,LOC107749611,LOC107666962,LOC103399082 coding downstream 115529 34543069 ~ 34564739 (+)
G115557 NA non-coding upstream 216594 34210118 ~ 34210874 (+)
G115512 NA non-coding upstream 310642 34116398 ~ 34116826 (+)
G115511 NA non-coding upstream 313190 34113596 ~ 34114278 (+)
G115443 NA non-coding upstream 758493 33668724 ~ 33668975 (+)
G115374 LOC108427631 non-coding upstream 958300 33440835 ~ 33469168 (+)
G115614 NA non-coding downstream 245313 34672853 ~ 34686380 (+)
G115619 NA non-coding downstream 260692 34688232 ~ 34734927 (+)
G115755 NA non-coding downstream 775377 35202917 ~ 35204176 (+)
G115757 NA non-coding downstream 810080 35237620 ~ 35238160 (+)
G115764 NA non-coding downstream 853069 35280609 ~ 35280927 (+)
LOC103038162 NA other upstream 35509 34380297 ~ 34391959 (+)
rbm38 rbm38,LOC103039930,LOC108436278 other upstream 86724 34330998 ~ 34340744 (+)
G115510 grm7,LOC108271537,LOC107668159,LOC107708172,LOC107569297,LOC108427575 other upstream 330603 34095917 ~ 34096865 (+)
G115133 NA other upstream 1816265 32610449 ~ 32611203 (+)
LOC103025619 LOC103025619,LOC108427613,LOC108272187,LOC104930301,LOC103373509,LOC100704252,LOC104955611 other upstream 2106813 32245266 ~ 32320655 (+)
G115736 NA other downstream 493161 34920701 ~ 35008942 (+)
LOC111193767 NA other downstream 629610 35057150 ~ 35130073 (+)
LOC103023619 cadps,LOC106953609 other downstream 863288 35290828 ~ 35363640 (+)
LOC103045376 LOC103045376,LOC107721197,LOC107584442,LOC107673487,LOC107712108,LOC107667402 other downstream 1126061 35553601 ~ 35559726 (+)
G115917 NA other downstream 1215334 35642874 ~ 35676035 (+)

Expression



Co-expression Network