Gene
RNA
| Item | Value |
|---|---|
| gene id | G61098 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000010 |
| NCBI id | null |
| chromosome length | 12265998 |
| location | 789195 ~ 789490 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU69596 | True | 296 | lncRNA | 0.32 | 1 | 789195 | 789490 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000010_00691767_00731442 | MAGIXA, MAGIX | coding | downstream | 57753 | 691767 ~ 731442 (-) |
| CI01000010_00653231_00678240 | NA | coding | downstream | 109502 | 653185 ~ 679693 (-) |
| CI01000010_00601570_00615159 | IQSEC2 | coding | downstream | 174036 | 601570 ~ 615159 (-) |
| CI01000010_00553512_00562038 | NA | coding | downstream | 227157 | 553413 ~ 562038 (-) |
| CI01000010_00532752_00544586 | CSDE1 | coding | downstream | 244609 | 532617 ~ 544586 (-) |
| CI01000010_00810923_00813645 | NA | coding | upstream | 20957 | 810447 ~ 813870 (-) |
| CI01000010_00861290_00870510 | NA | coding | upstream | 70990 | 860480 ~ 871146 (-) |
| CI01000010_00902754_00903080 | NA | coding | upstream | 113027 | 902517 ~ 903230 (-) |
| CI01000010_00929453_00930078 | NA | coding | upstream | 139571 | 929061 ~ 930537 (-) |
| CI01000010_00952202_00958971 | PTK6 | coding | upstream | 162402 | 951892 ~ 959383 (-) |
| G61075 | NA | non-coding | downstream | 5673 | 780807 ~ 783522 (-) |
| G61043 | NA | non-coding | downstream | 192510 | 596126 ~ 596685 (-) |
| G61055 | NA | non-coding | downstream | 204108 | 584816 ~ 585087 (-) |
| G61051 | NA | non-coding | downstream | 209429 | 579044 ~ 579766 (-) |
| G61050 | NA | non-coding | downstream | 210247 | 578669 ~ 578948 (-) |
| G61104 | NA | non-coding | upstream | 14705 | 804195 ~ 804412 (-) |
| G61105 | NA | non-coding | upstream | 15580 | 805070 ~ 805362 (-) |
| G61115 | NA | non-coding | upstream | 48972 | 838462 ~ 840123 (-) |
| G61117 | NA | non-coding | upstream | 51271 | 840761 ~ 844440 (-) |
| G61127 | NA | non-coding | upstream | 96451 | 885941 ~ 890832 (-) |
| G61045 | NA | other | downstream | 213684 | 572753 ~ 575511 (-) |
| G61888 | NA | other | upstream | 454979 | 1244469 ~ 1246018 (-) |
| G61965 | NA | other | upstream | 634935 | 1424425 ~ 1545051 (-) |
| CI01000010_03527436_03530341 | NA | other | upstream | 2740180 | 3527408 ~ 3530359 (-) |
| CI01000010_03890095_03899058 | SSBP3B, SSBP3, SSBP2 | other | upstream | 3100579 | 3890069 ~ 3899058 (-) |
| G64237 | NA | other | upstream | 3440460 | 4229950 ~ 4236416 (-) |
