G60852


Basic Information

Item Value
gene id G60852
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 948857 ~ 959047 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU69283
AAGTCGTTATTTTTTTTATTTTTTTTGGCGCACCAAAAATATTCTCGTCTCTTTATAATATTAATATTGAACCTATAATAATATTTTATTGCCGTAGACTTTCCACACTGATCCCACAGTTGTTTCTAAACAGAGACAAGAGCTAAAAACAGTCTCAGTCTGTCGATGGAATCTCCCCGCGAGCTTCACCGTCAAGGTTACCCTGTACAAAGGTGAACACGTGCACACAAAAAAGTTTGTGTACAGATACGTTCTTGGAAGTGTTTCAAGCTGCCCTGCCACTGAAATCTGAATTATTGGGTGTCAGATTGCAGAGTACAAGAGGTGTCCAAATTCCATCAGGGAAGCCAGTCATCATGCTAACGTGACCTTCCTGAACATCCTGTCATTTTTCCGATTAGTCTGGCCAGGGCCTTGGGGGCAGTGCTTGGAGATAAAGACAAAGCAGCTGGGAGATGACCTTAAATAAAGTATGCAAATTAAGTATTCGGATTTAGGAACCCACCCCAGACTCTAGAGTTTCACCAGTCCTACTCCAATCAACACAACTATTCCAAGAATGGGACAGGGGCACCAAGAGCCATTGAAGACAAAAGGGACGTGTGAGACGGGTACCAGACCTCAGGGAATTCCTCCTGTAGTGCTCCACCAGATTCTCCAGGCTCTGAAACATTTGACTCTGCTCCAAATAGAAACTTCCATTCTGATTCTGATGGACCTTAATGTGTTTCACTTCCTTGTCACTGCTTACCACTGGCAGAATGACACAGAGAGAGAAAGGATGCAGACAGTCGAGGAGCACTGTTTAGATATTTTCTAGCATGAATGAACCAAATAGGCAAGAAGAACACAGAGAGAAATGCTTGCACTTTCATCAAGTCTATATATGACTGGACTGACTACATTTCTTAGATTAATTTACTACTATGTCATTAGTTATGCCCTATTACTTGTAAAGACTAATAGCATAGGCAGAACCTGATGTAAAATGCAGTTTGAGTTTAAAATCAAGTTCAGTACACACAACAATCACTCTGACGTACCTGATAATACACACCCTATGTGATCCTTTTCACTGTGTCGCAACAGGAAAGCACCTGCTCCATTCCCTGGAGCCATAAGCAAATTCTGGGTCTCAAAACGATTCAGTGTCCCAAAATACCAACTAAAGAAGAACACAGTTTTTCAAATCACATGCATATGAACCAGAGTTTGGACAAGACTGCATTTGTCTTGGATGCATATTACATACGACAATAATTTGACTATCTGCAGTCTGTTTCCCATGAAAGATTTTCCACCACAGAAACAAAAAAGAAAACAAAAGGCAATTGCGACTTTTTAATCTCACAATTTTTTTCTTGTAATTTTTAATATTATATTATTATTATATGTAATATTATTATTATTAGGCCTACTTCTTTGATATTGTCATTCTTGAAGAATGAAGTTTTCACAGTTCACTGGTCCTGTCCGCGCTCAGAGTTCTTGACTCAAGGTTTTCTGTATAGAAAATATTGTAGTCTACTTACGGTTGCTCTTTCACAGTTTGCCTTCTCGCCAGGAAATTTTGAGGAACGACGCCCTTGGCTGTCACCGATCCGTTTCCGTCCAGTTTAACGGCTGTCCACCAGTCACCCTCGCGCTTGCAGATTCGGAACTGCTCTCCCTCCTGGAAGGACAGTTCCTCGTCCGCGCGAGCCTGGAAGGGCCACAGCGCAGTGTATATCTCACCTTCGGGCTCAGACACGGATGAACTTGGCGGAATTTGTGGCTGAAGTTTGGTGGTGGTTGCAGATTTTTCAACTTCAGTCTTAGACGACGTGAAAAGTCTCTCACAAAACGCCCCCAAACCGGGGCACGAACAGCACCCGTTCTTGTACATTTCATTTGAATGTGAATCTATGACTGCAACAGGTTCCGGAATGATGAGACGTGGAAGCTGAGTCCTCCACCGTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69283 True 1961 lncRNA 0.42 4 948857 959047

Neighbor

gene id symbol gene type direction distance location
CI01000010_00946586_00947327 NA coding upstream 1280 945182 ~ 947577 (+)
CI01000010_00944226_00945123 NA coding upstream 3679 944226 ~ 945178 (+)
CI01000010_00934527_00937510 NA coding upstream 10881 934527 ~ 937976 (+)
CI01000010_00924389_00928340 DNAJC5 coding upstream 20506 923961 ~ 928351 (+)
CI01000010_00912846_00919998 NA coding upstream 28630 912846 ~ 920227 (+)
CI01000010_01029244_01041878 DNMT3BA coding downstream 69802 1028849 ~ 1042357 (+)
CI01000010_01046137_01048306 MAPRE1A coding downstream 86910 1045957 ~ 1048518 (+)
CI01000010_01050815_01053323 NA coding downstream 91601 1050648 ~ 1053506 (+)
CI01000010_01055064_01058564 SUV39H1A coding downstream 96017 1055064 ~ 1058788 (+)
CI01000010_01062352_01063144 NA coding downstream 103305 1062352 ~ 1063259 (+)
G60817 NA non-coding upstream 159431 788888 ~ 789426 (+)
G60801 NA non-coding upstream 212848 727837 ~ 736009 (+)
G60780 NA non-coding upstream 270750 673066 ~ 678107 (+)
G60693 NA non-coding upstream 351762 596824 ~ 597095 (+)
G60745 NA non-coding upstream 380925 567603 ~ 567932 (+)
G60915 NA non-coding downstream 59970 1019017 ~ 1019485 (+)
G61218 NA non-coding downstream 291198 1250245 ~ 1250446 (+)
G61220 NA non-coding downstream 293289 1252336 ~ 1252899 (+)
G61219 NA non-coding downstream 294021 1253068 ~ 1253739 (+)
G61221 NA non-coding downstream 294929 1253976 ~ 1255045 (+)
CI01000010_00881905_00883563 NA other upstream 65343 881195 ~ 883684 (+)
CI01000010_00826648_00831638 NA other upstream 110425 826648 ~ 832705 (+)
CI01000010_03197380_03199958 NA other downstream 2235108 3197380 ~ 3200044 (+)
CI01000010_03320340_03346243 NA other downstream 2354648 3313695 ~ 3347796 (+)
G62838 NA other downstream 2931048 3890095 ~ 3893793 (+)
G62856 NA other downstream 2978710 3937757 ~ 3939945 (+)
G62983 NA other downstream 3489125 4448172 ~ 4449327 (+)

Expression


Co-expression Network