G61219


Basic Information

Item Value
gene id G61219
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 1253068 ~ 1253739 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU69734
CCTGGTGGTAGGGTGGCGGTTCTGGGCGCTTAATTCGAATCGATCCTTGTCGTTCGAGTGAGCGGTGTTTGGACACTGCTAAATTGTTTTTCTGATGCCAGGTTTTAAGCTCTCCTGATACCATTTCTCGTGGAAGCACCCGGCTGGGATGATTGGGGTATTCTCTTAGCGACGTCGTGCGGACCACCTTTGTGTACGGCGGTGGAGGCTTGAGAATCCGTTTGGGTGAAGTAAACTCCACTTGTTGGGGTTTATTACTATGCATGGTACCAGATTGTGAATTCGGTCCAAGTTGCAGCCTCCCCATGTCTGCCTGAAGTGGTGTCCTGTTGTTTATCTTCACTTGACTGGGGCCGGCCATGAAGTGAGGTGGGTTGTTGTTGTTGTTGTTTTTGGGTGGGCTGTTGGTGTTGAGCTGGCCTGGTGCTTTATTTGGAGCAGTGCGATGGTAGCCGTATGGTGGCGGACAGGGTTTAGGTGCCTCAGTGGTTGTCTCTCGGCTGGAGGAACTGCTATATGAGGAAATGGAAAGCTCGGAGCTGCTGTCTTCAGAGCTGCACTGATATAAACGTTGAACGGAGTAGGCTAACGCAAAATCGGTCACTCGTCGACGTGGCAACTTGGTCCGGCCCCGTCCCAGGTCTGAGCTGGCCTTGGTCAATTCTGGTTTGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU69734 True 672 lncRNA 0.52 1 1253068 1253739

Neighbor

gene id symbol gene type direction distance location
CI01000010_01247734_01250856 NA coding upstream 2156 1247734 ~ 1250912 (+)
CI01000010_01239096_01245966 RL10A, RPL10A coding upstream 7077 1239029 ~ 1245991 (+)
CI01000010_01235831_01238043 NA coding upstream 14420 1235373 ~ 1238648 (+)
CI01000010_01227374_01232982 PPARDB, PPARD, PPARB2A coding upstream 19203 1225615 ~ 1233865 (+)
CI01000010_01202099_01209001 TBC1D25 coding upstream 42895 1202099 ~ 1210173 (+)
CI01000010_01274112_01288620 NA coding downstream 20373 1274112 ~ 1288780 (+)
CI01000010_01299770_01313065 NA coding downstream 45287 1299026 ~ 1313116 (+)
CI01000010_01335600_01340362 NA coding downstream 81861 1335600 ~ 1340743 (+)
CI01000010_01353784_01361926 NA coding downstream 100045 1353784 ~ 1361998 (+)
CI01000010_01382147_01388079 NA coding downstream 128408 1382147 ~ 1388431 (+)
G61220 NA non-coding upstream 169 1252336 ~ 1252899 (+)
G61218 NA non-coding upstream 2622 1250245 ~ 1250446 (+)
G60915 NA non-coding upstream 233583 1019017 ~ 1019485 (+)
G60852 NA non-coding upstream 294021 948857 ~ 959047 (+)
G60817 NA non-coding upstream 463642 788888 ~ 789426 (+)
G61221 NA non-coding downstream 237 1253976 ~ 1255045 (+)
G61222 NA non-coding downstream 1599 1255338 ~ 1255572 (+)
G61223 NA non-coding downstream 6853 1260592 ~ 1260909 (+)
G61224 NA non-coding downstream 8519 1262258 ~ 1262479 (+)
G61225 NA non-coding downstream 8833 1262572 ~ 1262869 (+)
CI01000010_00946586_00947327 NA other upstream 305524 945182 ~ 947577 (+)
CI01000010_00881905_00883563 NA other upstream 369554 881195 ~ 883684 (+)
CI01000010_00826648_00831638 NA other upstream 414636 826648 ~ 832705 (+)
CI01000010_03197380_03199958 NA other downstream 1940416 3197380 ~ 3200044 (+)
CI01000010_03320340_03346243 NA other downstream 2059956 3313695 ~ 3347796 (+)
G62838 NA other downstream 2636356 3890095 ~ 3893793 (+)
G62856 NA other downstream 2684018 3937757 ~ 3939945 (+)
G62983 NA other downstream 3194433 4448172 ~ 4449327 (+)

Expression


Co-expression Network