XLOC_000075 (ube2f)


Basic Information

Item Value
gene id XLOC_000075
gene name ube2f
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 6646529 ~ 6664123 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00000145
GGAACAACTTCCGGCTTCTAAACCGCTCAGGCAGCGGAAATCATTAAACTCGGCGGAACTAATCCTCGCATCGTTCCACtcaattttgtttcttttatcgACGTTCAGCATATTTTATCTTGAAGTTGTTTTGGGGGGAAAACGTGCAAAATTCACGTCTGGTGTCCCGATTATGGTGTAAACAGGGCAGTTCAGTCACTCTGACAGCGGCAGGTGTGTTAGGGTGTGTATGTTGGTCTGTGGGGATGCTGACGTTAGCCAGTAAGCTGAAGAGGGAGGAGGGCGTAAGGGCCGGCCGGACCCCTGCAGGCTCTAACGATGCCGCTCATAGAGTGTCCATCAGAGATCGACTGCTCATCAAAGAGGTTGCAGAACTTGAGGCCAACCTTCCAAGTACATGTAAAGTTACATTTCCTGATGAAAACAAACTCTGTCACTTCCAGTTGGCCATTTCTCCAGATGAAGGCTATTACCTTGGTGGAAAGTTTCAGTTTGAGATCGAAGTTCCTGAAGCCTATAATATGGTGCCTCCCAAAGTGAAGTGCTTGACTAGAATATGGCACCCGAACATTGCAGAAACGGGCGAGATTTGTCTGAGTTTATTGCGAGAGCATTCAATTGATGGTACTGGATGGGCACCCACTCGTACTctaaagGATGTAGTATGGGGACTGAATTCACTCTTCACTGATCTTCTTAACTTTGATGACCCACTGAATATAGATGCAGCAGAGCATCATTTACGAGATAAGGAGGATTTCAGGAACAAAGTTCAGGACTTCATCAAAAACTATGCAAGATGATGTGTGTCTGCCACGCGAGCCACTCTCACATGCATGTGACCGATGTACGTCGATCAAGACTGCAACCGAGGCAAAATCTCATTATTAAAACATTCTTCGGGGAGGGGGGGGGAAGAAGCAAGTTAAAATAAGTGTTGAATGACACTGCGAGTCACATCTCAAGATATTTGGGAAGGATCAGGGCCGTACTGTCTATTTTTGatggcttattattattattttgg
>TCONS_00000146
TTAAACTCGGCGGAACTAATCCTCGCATCGTTCCACtcaattttgtttcttttatcgACGTTCAGCATATTTTATCTTGAAGTTGTTTTGGGGGGAAAACGTGCAAAATTCACGTCTGGTGTCCCGATTATGGTGTAAACAGGGCAGTTCAGTCACTCTGACAGCGGCAGgtttttatggtaatattttacagtaagtaTTGCTTACTGTAAACTTTTTCTGTTACCTACATTAGTTAACTACCTTTTAGAAGAATAActgaaaaaaaggagaaaaaatgtGAAAAGGAGTGCTGTTTTCATTTTAGTTAGGTGTGTTAGGGTGTGTATGTTGGTCTGTGGGGATGCTGACGTTAGCCAGTAAGCTGAAGAGGGAGGAGGGCGTAAGGGCCGGCCGGACCCCTGCAGGCTCTAACGATGCCGCTCATAGAGTGTCCATCAGAGATCGACTGCTCATCAAAGAGGTTGCAGAACTTGAGGCCAACCTTCCAAGTACATGTAAAGTTACATTTCCTGATGAAAACAAACTCTGTCACTTCCAGTTGGCCATTTCTCCAGATGAAGGCTATTACCTTGGTGGAAAGTTTCAGTTTGAGATCGAAGTTCCTGAAGCCTATAATATGGTGCCTCCCAAAGTGAAGTGCTTGACTAGAATATGGCACCCGAACATTGCAGAAACGGGCGAGATTTGTCTGAGTTTATTGCGAGAGCATTCAATTGATGGTACTGGATGGGCACCCACTCGTACTctaaagGATGTAGTATGGGGACTGAATTCACTCTTCACTGATCTTCTTAACTTTGATGACCCACTGAATATAGATGCAGCAGAGCATCATTTACGAGATAAGGAGGATTTCAGGAACAAAGTTCAGGACTTCATCAAAAACTATGCAAGATGATGTGTGTCTGCCACGCGAGCCACTCTCACATGCATGTGACCGATGTACGTCGATCAAGACTGCAACCGAGGCAAAATCTCATTATTAAAACATTCTTCGGGGAGGGGGGGGGAAGAAGCAAGTTAAAATAAGTGTTGAATGACACTGCGAGTCACATCTCAAGATATTTGGGAAGGATCAGGGCCGTACTGTCTATTTTTGatggcttattattattattttggtgttATTTTTGAAAGATCTTCTCAAACAACTTTGCTTTTACTCCCCCacgaaaaagaaaagtaaaaaaaaaaaaaaaaacgtacaaagATGGTGATCATGAAAACAAGGCCGCGCAGCCTCTCTGATGTCACCTCCTATATTCTATAGTGCCTCTGTGTTTTTGCCACATATAACTGGACATCATGAGCCAACTTTTGCAGCCTGCTTCCTCTTAAAACTTGACAAACACTGAGATTAATTTGTTCATAAGTGATGTCATAGAAATCCCAAAGCTCCAttggttcatttgtttgtttgctgtggGGGAGGAGTCCACCAATGAGGAAtcagaaaaaagaagaagaaaaaaaaacatgcagcacTGATGTCAAGCAGAAAATATCGGTGGTTTTTCGGACGGATTCTGTAAAGCCATTTCTTGAAACTCGGCACGTTCCGTCATGTAAAGTCACCGCCGTTATCAGACTACTCTATCACATGTGCACACATGCAAATATCACAATATCTGTGGGTGCCTCTGAGTTACCAaactgttttagttcagttctaATCTGTGAGAAGTTTGTGGGTGATTCTCATGAACGTTCAGCTTCCATTTTCACCTCGAAATCGAAGaggaaaatcaaataaatatattttcctttaaattaaaatttgttttcGTTTAAATGAGAAACCAAGCATGCTTTTCCCCACATTcaactataataaatatatatatatttttctctgcATTAGAGCAATGCAAATTTTGGGGAAAATTATGCTTAATTGTTAACATTCTTATCACCGCATATTACTTTAGATTTTGGGGTGAAATATTACCTGGATGTGTTCTGAACTGGCTTCATGAGATTCACCTTTTGCTCTTGTATGCATTTTTTGTCAGTGTATACACGTTCAGCTTTACCGATGTGTGCATGTTCACGAGATTACTTGTATGCTAGTATTGTGTTTGTGTGACagtgagagtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgagcgagAGTGACTGGAGATTTTAAAACATGTCTGATCTGGTAGCATGCACTGGGCTACTGAACCGCTCAGCCATAAAGCCTGTTCAATTAGtgaggatttattttatttaatttgacttttttttctccttGGAGGTGTATAtccatttgtaaaatatattaaagaggaGTTCTACCACTAA
>TCONS_00000147
gtttcttttatcgACGTTCAGCATATTTTATCTTGAAGTTGTTTTGGGGGGAAAACGTGCAAAATTCACGTCTGGTGTCCCGATTATGGTGTAAACAGGGCAGTTCAGTCACTCTGACAGCGGCAGGTGTGTTAGGGTGTGTATGTTGGTCTGTGGGGATGCTGACGTTAGCCAGTAAGCTGAAGAGGGAGGAGGGCGTAAGGGCCGGCCGGACCCCTGCAGGCTCTAACGATGCCGCTCATAGAGTGTCCATCAGAGATCGACTGCTCATCAAAGAGGTTGCAGAACTTGAGGCCAACCTTCCAAGTACATGTAAAGTTACATTTCCTGATGAAAACAAACTCTGTCACTTCCAGTTGGCCATTTCTCCAGCCTCCCAAAGTGAAGTGCTTGACTAGAATATGGCACCCGAACATTGCAGAAACGGGCGAGATTTGTCTGAGTTTATTGCGAGAGCATTCAATTGATGGTACTGGATGGGCACCCACTCGTACTctaaagGATGTAGTATGGGGACTGAATTCACTCTTCACTGATCTTCTTAACTTTGATGACCCACTGAATATAGATGCAGCAGAGCATCATTTACGAGATAAGGAGGATTTCAGGAACAAAGTTCAGGACTTCATCAAAAACTATGCAAGATGATGTGTGTCTGCCACGCGAGCCACTCTCACATGCATGTGACCGATGTACGTCGATCAAGACTGCAACCGAGGCAAAATCTCATTATTAAAACATTCTTCGGGGAGGGGGGGGGAAGAAGC

Function

symbol description
ube2f Predicted to enable NEDD8 conjugating enzyme activity. Predicted to be involved in protein neddylation. Predicted to be active in nucleus. Orthologous to human UBE2F (ubiquitin conjugating enzyme E2 F (putative)).

GO:

id name namespace
GO:0045116 protein neddylation biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0005634 nucleus cellular_component
GO:0061654 NEDD8 conjugating enzyme activity molecular_function
GO:0019788 NEDD8 transferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0061631 ubiquitin conjugating enzyme activity molecular_function

KEGG:

id description
ko04120 Ubiquitin mediated proteolysis
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-040426-2557 Predicted to enable NEDD8 conjugating enzyme activity. Predicted to be involved in protein neddylation. Predicted to be active in nucleus. Orthologous to human UBE2F (ubiquitin conjugating enzyme E2 F (putative)).

Ensembl:

ensembl_id ENSDARG00000025754

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00000145 False 1027 mRNA 0.46 10 6646529 6662926
TCONS_00000146 False 2322 mRNA 0.40 11 6646572 6664123
TCONS_00000147 True 767 mRNA 0.47 9 6646616 6662821

Neighbor

gene id symbol gene type direction distance location
XLOC_000074 si:ch211-93g23.2 coding upstream 173 6640437 ~ 6646356 (+)
XLOC_000072 NA coding upstream 92059 6379878 ~ 6554470 (+)
XLOC_000073 NA coding upstream 243306 6398210 ~ 6403223 (+)
XLOC_000071 hecw2b coding upstream 280463 6357059 ~ 6366066 (+)
XLOC_000070 LO018629.1 coding upstream 317237 6307305 ~ 6329292 (+)
XLOC_000076 NA coding downstream 910 6665033 ~ 6668339 (+)
XLOC_000077 NA coding downstream 95060 6759183 ~ 6760930 (+)
XLOC_000078 CU302223.1 coding downstream 123567 6787690 ~ 6787804 (+)
XLOC_000079 erbb4a coding downstream 153169 6817292 ~ 6925407 (+)
XLOC_000080 NA coding downstream 292790 6956913 ~ 6990027 (+)
XLOC_000065 NA non-coding upstream 847437 5795013 ~ 5799092 (+)
XLOC_000064 NA non-coding upstream 917845 5706970 ~ 5728684 (+)
XLOC_000059 NA non-coding upstream 1332934 5311479 ~ 5313595 (+)
XLOC_000081 CU929161.1 non-coding downstream 399714 7063837 ~ 7063943 (+)

Expression


Co-expression Network