G61763


Basic Information

Item Value
gene id G61763
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000010
NCBI id null
chromosome length 12265998
location 2985762 ~ 2986144 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU70340
GGGGTGATACACTAAAACAAGGTGGAAAAAGAGAGAGAGAGAAAGGCATATGGGCCTGACATGTCAATGCCAAGAAAAGCATGTTAAACTGAATTAGGACAATAAGATTGACAGAGCACAGGAAGAAGAACAGCAGAGGGTGAGAGAGTTGGCTTGGTCTGAGCACATACCGGTTCCCTGCCATATGGACCGGCGTTCATAATGCAGCTCAAAAGCAGAAGGACTCATCTGGGATCCGATTCCTTTTCATCCTATGCTGCTCCTGGTTCTCAAAGCTGATTCCAGTTCAGCGCTCCTGAACTGTAATACACCAGCACAGGTTAAACAGTAAAACTACGGTCAATTCTGAAGGTTTAAAGGGTTAGTTCACGCAAAAATGAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU70340 True 383 lncRNA 0.45 1 2985762 2986144

Neighbor

gene id symbol gene type direction distance location
CI01000010_02847074_02911612 NA coding upstream 74150 2847074 ~ 2911612 (+)
CI01000010_02821021_02827050 NA coding upstream 158545 2821021 ~ 2827217 (+)
CI01000010_02805903_02806462 NA coding upstream 178919 2805662 ~ 2806843 (+)
CI01000010_02734548_02755209 RFX2 coding upstream 229971 2734548 ~ 2755791 (+)
CI01000010_02726989_02731906 NA coding upstream 253401 2726552 ~ 2732361 (+)
CI01000010_03017924_03021246 FAM78BA, FAM78BB, FAM78B coding downstream 31072 3017216 ~ 3022870 (+)
CI01000010_03116123_03125761 EDEM3 coding downstream 129979 3116123 ~ 3126609 (+)
CI01000010_03142808_03164874 CLG10H1ORF21 coding downstream 154500 3140644 ~ 3165257 (+)
CI01000010_03172010_03192359 COLGALT2 coding downstream 185866 3172010 ~ 3192795 (+)
CI01000010_03197380_03199958 NA coding downstream 211236 3197380 ~ 3200044 (+)
G61762 NA non-coding upstream 160 2985383 ~ 2985602 (+)
G61761 NA non-coding upstream 393 2985126 ~ 2985369 (+)
G61760 NA non-coding upstream 675 2984790 ~ 2985087 (+)
G61676 NA non-coding upstream 181015 2803431 ~ 2804747 (+)
G61663 NA non-coding upstream 203283 2780080 ~ 2782479 (+)
G61769 NA non-coding downstream 8758 2994902 ~ 2995140 (+)
G61774 NA non-coding downstream 15125 3001269 ~ 3001484 (+)
G61779 NA non-coding downstream 20945 3007089 ~ 3007312 (+)
G61784 NA non-coding downstream 37821 3023965 ~ 3025452 (+)
CI01000010_00946586_00947327 NA other upstream 2038218 945182 ~ 947577 (+)
CI01000010_00881905_00883563 NA other upstream 2102248 881195 ~ 883684 (+)
CI01000010_00826648_00831638 NA other upstream 2147330 826648 ~ 832705 (+)
CI01000010_03320340_03346243 NA other downstream 327551 3313695 ~ 3347796 (+)
G62838 NA other downstream 903951 3890095 ~ 3893793 (+)
G62856 NA other downstream 951613 3937757 ~ 3939945 (+)
G62983 NA other downstream 1462028 4448172 ~ 4449327 (+)

Expression


Co-expression Network