G196314


Basic Information

Item Value
gene id G196314
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 8931149 ~ 8931359 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU266361
caacaacactgcaccacctatctttgacttactgcaactgcagtgaacagatttatagacttttatcagagcttgtactcaattgtactcaaaataacaaaaataaaatgaatacactgtaaaaccctagcttagaacacagtacagtatttggtagtggcactaattacagaaaatagataaataacattaataccacattaataccatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU266361 True 211 lncRNA 0.32 1 8931149 8931359

Neighbor

gene id symbol gene type direction distance location
LOC103021572 slc2a3a,LOC108439890,LOC107724104,LOC107693366,LOC107739512,LOC108273342,LOC107665492,LOC107589470 coding upstream 59950 8851232 ~ 8871199 (+)
LOC103022608 cacng8a,LOC103022608,LOC108439892,LOC107693368,LOC107724111,LOC107599529,LOC107739619,LOC107589386,LOC107656603 coding upstream 153438 8753398 ~ 8777711 (+)
LOC103023428 cacng7a,LOC103023428,LOC108439893,LOC107739516,LOC107656583,LOC107599530,LOC107724112,LOC107589388,LOC107693369 coding upstream 191251 8694546 ~ 8739898 (+)
LOC103040794 LOC108439895,LOC108272392,LOC107693370,LOC107589385,LOC107739517,LOC107599531,LOC107724118,LOC107656604 coding upstream 286082 8507235 ~ 8645067 (+)
LOC103032989 NA coding upstream 869586 8029959 ~ 8061563 (+)
trnav-cac_9 NA coding downstream 5159 8936518 ~ 8936590 (+)
trnav-cac_10 NA coding downstream 5349 8936708 ~ 8936780 (+)
trnav-cac_11 NA coding downstream 5539 8936898 ~ 8936970 (+)
trnav-cac_12 NA coding downstream 5729 8937088 ~ 8937160 (+)
trnav-cac_13 NA coding downstream 5919 8937278 ~ 8937350 (+)
G196286 NA non-coding upstream 81523 8849360 ~ 8849626 (+)
G196259 NA non-coding upstream 127303 8803118 ~ 8803846 (+)
G196257 NA non-coding upstream 134763 8792633 ~ 8796386 (+)
G196238 NA non-coding upstream 150193 8741530 ~ 8780956 (+)
G196234 NA non-coding upstream 250618 8680267 ~ 8680531 (+)
G196317 NA non-coding downstream 406710 9338069 ~ 9338819 (+)
G196329 NA non-coding downstream 446558 9377917 ~ 9427544 (+)
G196327 NA non-coding downstream 450391 9381750 ~ 9382549 (+)
G196396 NA non-coding downstream 676163 9607522 ~ 9608821 (+)
G196411 NA non-coding downstream 780531 9711890 ~ 9712641 (+)
G196232 NA other upstream 251179 8679284 ~ 8679970 (+)
LOC103033741 grik5,LOC108433750,LOC107549838,LOC107752523,LOC100331381,LOC107666346 other upstream 525680 8143873 ~ 8405469 (+)
G195793 NA other upstream 1637456 7293313 ~ 7293693 (+)
tapbp tapbp other upstream 1804035 7120612 ~ 7127114 (+)
LOC103021434 rxrba,LOC107566635,LOC107751683,LOC107694777,LOC107729870,LOC108272672 other upstream 1983993 6922288 ~ 6947156 (+)
mrps21 mrps21 other downstream 603070 9534429 ~ 9539648 (+)
LOC103046991 celf3a,LOC108437918,LOC107750801,LOC108272714 other downstream 671968 9603327 ~ 9638916 (+)
LOC103046684 LOC106605923,LOC107589412,LOC107582081,LOC107699547,LOC108429942 other downstream 769381 9700740 ~ 9704709 (+)
G196415 NA other downstream 789424 9720783 ~ 9721270 (+)
G196419 NA other downstream 809000 9740359 ~ 9740768 (+)

Expression


Co-expression Network