mrps21 (mrps21)


Basic Information

Item Value
gene id mrps21
gene name mrps21
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 9534429 ~ 9539648 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU266461
GTTTCTCTGGGCGGTGCTGGAAACATGTCGAACCACCTTCGCTTCGTGGCTCGGACGGTGATGGTCCGGGACGGAAACGTCGATGCTGCTTATAATGCTCTGACCAGGATCTTATCTGTGGATGGAATCGTTGAAACTGTGAAGCGCAAACGCTATTATGAAAAGCCTTGCAGACGCAGACAGAGGGAGAACTATGAAAACTGCAAGAGAATCTACCATGCAGAGATGGCACGCAAGATCTCCTTCATATCCAGGGCGGACAGACAAGACCCCTGGCTCGGGTGTTAGTCAACATGGAAGATGACCCCAGATGTCTTTTTACAAAAATCCATGTACTGTTGGGGGCGGGCAAGGGAGTTATCCCCTTATGGATGAATGAAAATGACCTGACCTGTGGACTGGCATATTGAAATACAAGATTCCACTTATTCAGTATGTCTAATAGCCCTCCAGTTTACTGAAATTCCATTCTAATAAATGTAATCTGAGCAGTTAAGTTCATTTTGTGCTTACCTTGTATCTGTTTGTGTTGTTACTGTACACATTGTGTAAAACTGTCCAGATCCTGGAGTTGGTTTCAATCCACCAATAAAATATCTGTATAATCTTTTGATAGAAACTGC
>TU266463
GTTTCTCTGGGCGGTGCTGGAAACATGTCGAACCACCTTCGCTTCGTGGCTCGGACGGTGATGGTCCGGGACGGAAACGTCGATGCTGCTTATAATGCTCTGACCAGGATCTTATCTGTGGATGGAATCGTTGAAACTGTGAAGCGCAAACGCTATTATGAAAAGCCTTGCAGACGCAGACAGAGGGAGAACTATGAAAACTGCAAGAGAATCTACCATGCAGAGATGGCACGCAAGATCTCCTTCATATCCAGGGCGGACAGACAAGACCCCTGGCTCGGGTGTTAGTCAACATGGAAGATGACCCCAGATGTCTTTTTACAAAAATCCATGTACTGTTGGGGGCGGGCAAGGGAGTTATCCCCTTATGGATGAATGAAAATGACCTGACCTGTGGACTGGCATATTGAAATACAAGATTCCACTTATTCAGTATGTCTAATAGCCCTCCAGTTTACTGAAATTCCATTCTAATAAATGTAATCTGAGCAGTTAAGTTCATTTTGTGCTTACCTTGTATCTGTTTGTGTTGTTACTGTACACATTGTGTAAAACTGTCCAGATCCTGGAGTTGGTTTCAATCCACCAATAAAATATCTGTATAATCTTTTGATAGAAACTGCTGTACATCTGCTGTACCATCAGTCTGTTTTCTGATTATTGTTTGAACATGTTATATCCTGAATGTGCTAAATCACTATGTAGTGTTCAAAACTAAGCCCTGTTTGAGCTGCATACGGTGTAAGTCTCATGTTTGAATGTACTATGATTGGTTAGCATTGATTTTCACCCAG
>TU266464
gtttagtgttttataGTTAACATTTTAGGGCTCTGTTCTCTCCGCTCAGTTCTCCGTGGCCGGAACGTTTCTGTGCTGATCGACGGTTCCGCCCGGACTGTTTCTCTGGGCGGTGCTGGAAACATGTCGAACCACCTTCGCTTCGTGGCTCGGACGGTGATGGTCCGGGACGGAAACGTCGATGCTGCTTATAATGCTCTGACCAGGATCTTATCTGTGGATGGAATCGTTGAAACTGTGAAGCGCAAACGCTATTATGAAAAGCCTTGCAGACGCAGACAGAGGGAGAACTATGAAAACTGCAAGAGAATCTACCATGCAGAGATGGCACGCAAGATCTCCTTCATATCCAGGGCGGACAGACAAGACCCCTGGCTCGGGTGTTAGTCAACATGGAAGATGACCCCAGATGTCTTTTTACAAAAATCCATGTACTGTTGGGGGCGGGCAAGGGAGTTATCCCCTTATGGATGAATGAAAATGACCTGACCTGTGGACTGGCATATTGAAATACAAGATTCCACTTATTCAGTATGTCTAATAGCCCTCCAGTTTACTGAAATTCCATTCTAATAAATGTAATCTGAGCAGTTAAGTTCATTTTGTGCTTACCTTGTATCTGTTTGTGTTGTTACTGTACACATTGTGTAAAACTGTCCAGATCCTGGAGTTGGTTTCAATCCACCAATAAAATATCTGTATAATCTTTTGATAGAAACTGC
>TU266466
gtttagtgttttataGTTAACATTTTAGGGCTCTGTTCTCTCCGCTCAGTTCTCCGTGGCCGGAACGTTTCTGTGCTGATCGACGGTTCCGCCCGGACTGTTTCTCTGGGCGGTGCTGGAAACATGTCGAACCACCTTCGCTTCGTGGCTCGGACGGTGATGGTCCGGGACGGAAACGTCGATGCTGCTTATAATGCTCTGACCAGGATCTTATCTGTGGATGGAATCGTTGAAACTGTGAAGCGCAAACGCTATTATGAAAAGCCTTGCAGACGCAGACAGAGGGAGAACTATGAAAACTGCAAGAGAATCTACCATGCAGAGATGGCACGCAAGATCTCCTTCATATCCAGGGCGGACAGACAAGACCCCTGGCTCGGGTGTTAGTCAACATGGAAGATGACCCCAGATGTCTTTTTACAAAAATCCATGTACTGTTGGGGGCGGGCAAGGGAGTTATCCCCTTATGGATGAATGAAAATGACCTGACCTGTGGACTGGCATATTGAAATACAAGATTCCACTTATTCAGTATGTCTAATAGCCCTCCAGTTTACTGAAATTCCATTCTAATAAATGTAATCTGAGCAGTTAAGTTCATTTTGTGCTTACCTTGTATCTGTTTGTGTTGTTACTGTACACATTGTGTAAAACTGTCCAGATCCTGGAGTTGGTTTCAATCCACCAATAAAATATCTGTATAATCTTTTGATAGAAACTGCTGTACATCTGCTGTACCATCAGTCTGTTTTCTGATTATTGTTTGAACATGTTATATCCTGAATGTGCTAAATCACTATGTAGTGTTCAAAACTAAGCCCTGTTTGAGCTGCATACGGTGTAAGTCTCATGTTTGAATGTACTATGATTGGTTAGCATTGATTTTCACCCAGGATGACTATTTAGCTGCAAGTAGATGGCTAAATTGACATCTTGCGGTCTACACTGTTTTAAGTAGTGTAGTGACGAAGGTTACTGCAGCTTAGTTGTGAAGGCTAGAGTATCAACAGTTCAGTACTGAGTATGTGCCTGGATTAGACGTTAGCATTTTCACCCAATGAAATAAAAGG
>XM_007230568.3
GTTCTCCGTGGCCGGAACGTTTCTGTGCTGATCGACGGTTCCGCCCGGACTGTTTCTCTGGGCGGTGCTGGAAACATGTCGAACCACCTTCGCTTCGTGGCTCGGACGGTGATGGTCCGGGACGGAAACGTCGATGCTGCTTATAATGCTCTGACCAGGATCTTATCTGTGGATGGAATCGTTGAAACTGTGAAGCGCAAACGCTATTATGAAAAGCCTTGCAGACGCAGACAGAGGGAGAACTATGAAAACTGCAAGAGAATCTACCATGCAGAGATGGCACGCAAGATCTCCTTCATATCCAGGGCGGACAGACAAGACCCCTGGCTCGGGTGTTAGTCAACATGGAAGATGACCCCAGATGTCTTTTTACAAAAATCCATGTACTGTTGGGGGCGGGCAAGGGAGTTATCCCCTTATGGATGAATGAAAATGACCTGACCTGTGGACTGGCATATTGAAATACAAGATTCCACTTATTCAGTATGTCTAATAGCCCTCCAGTTTACTGAAATTCCATTCTAATAAATGTAATCTGAGCAGTTAAGTTCATTTTGTGCTTACCTTGTATCTGTTTGTGTTGTTACTGTACACATTGTGTAAAACTGTCCAGATCCTGGAGTTGGTTTCAATCCACCAATAAAATATCTGTATAATCTTTTGATAGAAACTGCTGTA

Function

symbol description
mrps21 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Orthologous to human MRPS21 (mitochondrial ribosomal protein S21).

NR:

description
28S ribosomal protein S21, mitochondrial-like

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU266461 False 623 TUCP 0.44 2 9534528 9539300
TU266463 False 794 TUCP 0.43 2 9534528 9539471
TU266464 False 722 TUCP 0.45 2 9534429 9539300
TU266466 True 1070 TUCP 0.43 2 9534429 9539648
XM_007230568.3 False 678 mRNA 0.45 2 9534477 9539304

Neighbor

gene id symbol gene type direction distance location
LOC103023391 hcn3,LOC108437924,LOC107739502,LOC107656480,LOC107599514 coding upstream 185712 9339117 ~ 9348717 (+)
trnav-cac_44 NA coding upstream 582864 8951493 ~ 8951565 (+)
trnav-aac_54 NA coding upstream 583054 8951303 ~ 8951375 (+)
trnav-cac_43 NA coding upstream 583244 8951113 ~ 8951185 (+)
trnav-aac_53 NA coding upstream 583434 8950923 ~ 8950995 (+)
LOC111195503 NA coding downstream 5052 9544700 ~ 9559107 (+)
LOC103027509 NA coding downstream 20915 9560563 ~ 9590910 (+)
LOC103047595 cers2,LOC103047595,LOC108437916,LOC107750802,LOC107599505,LOC107693338,LOC107678801,LOC107739494 coding downstream 102529 9642177 ~ 9677820 (+)
LOC103044437 trim46,trim46b,LOC108437912,LOC108272350,LOC107589413,LOC107750805,LOC107693334 coding downstream 447154 9986802 ~ 10014297 (+)
LOC111195551 NA coding downstream 640805 10180453 ~ 10181232 (+)
G196329 NA non-coding upstream 106885 9377917 ~ 9427544 (+)
G196327 NA non-coding upstream 151880 9381750 ~ 9382549 (+)
G196317 NA non-coding upstream 195610 9338069 ~ 9338819 (+)
G196314 NA non-coding upstream 603070 8931149 ~ 8931359 (+)
G196286 NA non-coding upstream 684803 8849360 ~ 8849626 (+)
G196396 NA non-coding downstream 67874 9607522 ~ 9608821 (+)
G196411 NA non-coding downstream 172242 9711890 ~ 9712641 (+)
G196417 NA non-coding downstream 184155 9723803 ~ 9724329 (+)
G196416 NA non-coding downstream 185465 9725113 ~ 9727004 (+)
G196418 NA non-coding downstream 191130 9730778 ~ 9734673 (+)
G196232 NA other upstream 854459 8679284 ~ 8679970 (+)
LOC103033741 grik5,LOC108433750,LOC107549838,LOC107752523,LOC100331381,LOC107666346 other upstream 1128960 8143873 ~ 8405469 (+)
G195793 NA other upstream 2240736 7293313 ~ 7293693 (+)
tapbp tapbp other upstream 2407315 7120612 ~ 7127114 (+)
LOC103021434 rxrba,LOC107566635,LOC107751683,LOC107694777,LOC107729870,LOC108272672 other upstream 2587273 6922288 ~ 6947156 (+)
LOC103046991 celf3a,LOC108437918,LOC107750801,LOC108272714 other downstream 63679 9603327 ~ 9638916 (+)
LOC103046684 LOC106605923,LOC107589412,LOC107582081,LOC107699547,LOC108429942 other downstream 161092 9700740 ~ 9704709 (+)
G196415 NA other downstream 181135 9720783 ~ 9721270 (+)
G196419 NA other downstream 200711 9740359 ~ 9740768 (+)
LOC103026923 si:ch211-39a7.1,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611,LOC108273254,LOC107589479 other downstream 234731 9774379 ~ 9888217 (+)

Expression


Co-expression Network