LOC103046684 (LOC106605923,LOC107589412,LOC107582081,LOC107699547,LOC108429942)


Basic Information

Item Value
gene id LOC103046684
gene name LOC106605923,LOC107589412,LOC107582081,LOC107699547,LOC108429942
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 9700740 ~ 9704709 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU266504
tTTACTttcattgtacatttaatattgtagaTACAATTGAGCTTTATAGGAACACTGCATACACTAttcacactatatacactttaTATTATACGTGCACAAAACACAATTCACCTCAACAAAGATGCTTTAAAGTGTCATGAAGTTGGTTTAACTGTCTTTTAGGCACATTATGAACGTGTTTTGAACATGAATCTAGCTGCTGTGCCACATGGTCTAATTTGTGTCTCTCTTTCCACGCCCTGCCCACTGCTCTGGCTTTTGACTGACAGGAAACTTAACCACTCGCCTAGCACCAACTAAAAAGGTATTACAACAGAAATTAGTGAATAAACTATTGTACAAACAAAGTAAAGCAGAAACTAGACCTTACGAACATGGCCGCTCCGTCCTCCGGTTCTGTAAAAAGGTCACGTGCTGAGTTTATATCATCCCGCCGTTTCCGCTAGCACTTCCTTTCCGGCAGCGGCTGAATCCTCGCCAACATGCCACTCGCAAAAGACTTGTTGCACCCCCCAcctgaggaggagaggaggaggcaCAAGAAGAAGCGTCTCGTGCAGAGCCCCAATTCATATTTCATGGATGTCAAGTGTCCAGgATGTTACAAAATCACAACGGTGTTCAGCCATGCTCAGACAGTGGTGCTGTGTGTCGGCTGTTCGACTGTTCTGTGTCAACCCACTGGAGGCAAAGCACGTCTCACAGAAGGGTGTTCCTTCAGGAGGAAGCAACATTAAGCTCTTTGCTAGGTTTTCCAGTAAGGAGGAAGGGAGAGATGGGGTTGGACTTTGCCCTGGTGAACTTGTCCTCTGGGTTTGATCTCTGAAGATTCCAcacgagagaaagaaaagaacctCCATCAGTTGCTTGCTCTCCAAcccattctctttctttcaatAAAGTGTTTTGGCTAAAGTGAT
>TU266505
tTTACTttcattgtacatttaatattgtagaTACAATTGAGCTTTATAGGAACACTGCATACACTAttcacactatatacactttaTATTATACGTGCACAAAACACAATTCACCTCAACAAAGATGCTTTAAAGTGTCATGAAGTTGGTTTAACTGTCTTTTAGGCACATTATGAACGTGTTTTGAACATGAATCTAGCTGCTGTGCCACATGGTCTAATTTGTGTCTCTCTTTCCACGCCCTGCCCACTGCTCTGGCTTTTGACTGACAGGAAACTTAACCACTCGCCTAGCACCAACTAAAAAGGTCACGTGCTGAGTTTATATCATCCCGCCGTTTCCGCTAGCACTTCCTTTCCGGCAGCGGCTGAATCCTCGCCAACATGCCACTCGCAAAAGACTTGTTGCACCCCCCAcctgaggaggagaggaggaggcaCAAGAAGAAGCGTCTCGTGCAGAGCCCCAATTCATATTTCATGGATGTCAAGTGTCCAGgATGTTACAAAATCACAACGGTGTTCAGCCATGCTCAGACAGTGGTGCTGTGTGTCGGCTGTTCGACTGTTCTGTGTCAACCCACTGGAGGCAAAGCACGTCTCACAGAAGGGTGTTCCTTCAGGAGGAAGCAACATTAAGCTCTTTGCTAGGTTTTCCAGTAAGGAGGAAGGGAGAGATGGGGTTGGACTTTGCCCTGGTGAACTTGTCCTCTGGGTTTGATCTCTGAAGATTCCAcacgagagaaagaaaagaacctCCATCAGTTGCTTGCTCTCCAAcccattctctttctttcaatAAAGTGTTTTGGCTAAAGTGAT
>XM_007230564.3
TCTGTAAAAAGGTCACGTGCTGAGTTTATATCATCCCGCCGTTTCCGCTAGCACTTCCTTTCCGGCAGCGGCTGAATCCTCGCCAACATGCCACTCGCAAAAGACTTGTTGCACCCCCCAcctgaggaggagaggaggaggcaCAAGAAGAAGCGTCTCGTGCAGAGCCCCAATTCATATTTCATGGATGTCAAGTGTCCAGgATGTTACAAAATCACAACGGTGTTCAGCCATGCTCAGACAGTGGTGCTGTGTGTCGGCTGTTCGACTGTTCTGTGTCAACCCACTGGAGGCAAAGCACGTCTCACAGAAGGGTGTTCCTTCAGGAGGAAGCAACATTAAGCTCTTTGCTAGGTTTTCCAGTAAGGAGGAAGGGAGAGATGGGGTTGGACTTTGCCCTGGTGAACTTGTCCTCTGGGTTTGATCTCTGAAGATTCCAcacgagagaaagaaaagaacctCCATCAGTTGCTTGCTCTCCAAcccattctctttctttcaatAAAGTGTTTTGGCTAAAGTGA

Function

NR:

description
PREDICTED: 40S ribosomal protein S27-like

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU266504 True 923 lncRNA 0.44 4 9700740 9704709
TU266505 False 821 lncRNA 0.45 5 9700740 9704709
XM_007230564.3 False 524 mRNA 0.49 4 9701138 9704708

Neighbor

gene id symbol gene type direction distance location
LOC103047595 cers2,LOC103047595,LOC108437916,LOC107750802,LOC107599505,LOC107693338,LOC107678801,LOC107739494 coding upstream 22920 9642177 ~ 9677820 (+)
LOC103027509 NA coding upstream 109830 9560563 ~ 9590910 (+)
LOC111195503 NA coding upstream 141633 9544700 ~ 9559107 (+)
LOC103023391 hcn3,LOC108437924,LOC107739502,LOC107656480,LOC107599514 coding upstream 352023 9339117 ~ 9348717 (+)
trnav-cac_44 NA coding upstream 749175 8951493 ~ 8951565 (+)
LOC103044437 trim46,trim46b,LOC108437912,LOC108272350,LOC107589413,LOC107750805,LOC107693334 coding downstream 282093 9986802 ~ 10014297 (+)
LOC111195551 NA coding downstream 475744 10180453 ~ 10181232 (+)
trnap-ugg_5 NA coding downstream 510282 10214991 ~ 10215062 (+)
trnap-agg_7 NA coding downstream 510439 10215148 ~ 10215219 (+)
trnap-agg_8 NA coding downstream 510640 10215349 ~ 10215419 (+)
G196396 NA non-coding upstream 91919 9607522 ~ 9608821 (+)
G196329 NA non-coding upstream 273196 9377917 ~ 9427544 (+)
G196327 NA non-coding upstream 318191 9381750 ~ 9382549 (+)
G196317 NA non-coding upstream 361921 9338069 ~ 9338819 (+)
G196314 NA non-coding upstream 769381 8931149 ~ 8931359 (+)
G196411 NA non-coding downstream 7181 9711890 ~ 9712641 (+)
G196417 NA non-coding downstream 19094 9723803 ~ 9724329 (+)
G196416 NA non-coding downstream 20404 9725113 ~ 9727004 (+)
G196418 NA non-coding downstream 26069 9730778 ~ 9734673 (+)
G196421 NA non-coding downstream 36631 9741340 ~ 9741835 (+)
LOC103046991 celf3a,LOC108437918,LOC107750801,LOC108272714 other upstream 61824 9603327 ~ 9638916 (+)
mrps21 mrps21 other upstream 161092 9534429 ~ 9539648 (+)
G196232 NA other upstream 1020770 8679284 ~ 8679970 (+)
LOC103033741 grik5,LOC108433750,LOC107549838,LOC107752523,LOC100331381,LOC107666346 other upstream 1295271 8143873 ~ 8405469 (+)
G195793 NA other upstream 2407047 7293313 ~ 7293693 (+)
G196415 NA other downstream 16074 9720783 ~ 9721270 (+)
G196419 NA other downstream 35650 9740359 ~ 9740768 (+)
LOC103026923 si:ch211-39a7.1,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611,LOC108273254,LOC107589479 other downstream 69670 9774379 ~ 9888217 (+)
dpm3 dpm3,LOC107678800,LOC107693280,LOC107750811 other downstream 353430 10058139 ~ 10061099 (+)
G196633 NA other downstream 786837 10491546 ~ 10492101 (+)

Expression


Co-expression Network