G196419


Basic Information

Item Value
gene id G196419
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 9740359 ~ 9740768 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU266520
gtttacattatatatgctcccactgggcaaagttattagaaaacatgatgtgaattttcattgttatgcggatgacacgcagctcttcatatcagccaaacctgatgacagagtgagattaaagaaaatcgaggattgtgtagaagatgtaaaatcatggatgtcgcacaacttcctcctattaaatagtgataaaacagaagttctcctattaggccccaaagctgctagaaataaattatcagacttaatgctaaatctggctgacttctcagccacccctggttcagcagctaaaaaccttggagttatcatagattcagatctagcattcgataaacacatatctaatgttactagaacagcttttctacacctccgtaacatcgccaagctaagaaatgccctat

Function

GO: NA

KEGG:

id description
ko04672 Intestinal immune network for IgA production
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU266520 True 410 TUCP 0.38 1 9740359 9740768

Neighbor

gene id symbol gene type direction distance location
LOC103047595 cers2,LOC103047595,LOC108437916,LOC107750802,LOC107599505,LOC107693338,LOC107678801,LOC107739494 coding upstream 62539 9642177 ~ 9677820 (+)
LOC103027509 NA coding upstream 149449 9560563 ~ 9590910 (+)
LOC111195503 NA coding upstream 181252 9544700 ~ 9559107 (+)
LOC103023391 hcn3,LOC108437924,LOC107739502,LOC107656480,LOC107599514 coding upstream 391642 9339117 ~ 9348717 (+)
trnav-cac_44 NA coding upstream 788794 8951493 ~ 8951565 (+)
LOC103044437 trim46,trim46b,LOC108437912,LOC108272350,LOC107589413,LOC107750805,LOC107693334 coding downstream 246034 9986802 ~ 10014297 (+)
LOC111195551 NA coding downstream 439685 10180453 ~ 10181232 (+)
trnap-ugg_5 NA coding downstream 474223 10214991 ~ 10215062 (+)
trnap-agg_7 NA coding downstream 474380 10215148 ~ 10215219 (+)
trnap-agg_8 NA coding downstream 474581 10215349 ~ 10215419 (+)
G196418 NA non-coding upstream 5686 9730778 ~ 9734673 (+)
G196416 NA non-coding upstream 13355 9725113 ~ 9727004 (+)
G196417 NA non-coding upstream 16030 9723803 ~ 9724329 (+)
G196411 NA non-coding upstream 27718 9711890 ~ 9712641 (+)
G196396 NA non-coding upstream 131538 9607522 ~ 9608821 (+)
G196421 NA non-coding downstream 572 9741340 ~ 9741835 (+)
G196464 NA non-coding downstream 32740 9773508 ~ 9773769 (+)
G196467 NA non-coding downstream 45292 9786060 ~ 9801363 (+)
G196473 NA non-coding downstream 160399 9901167 ~ 9928316 (+)
G196531 NA non-coding downstream 340244 10081012 ~ 10084775 (+)
G196415 NA other upstream 19089 9720783 ~ 9721270 (+)
LOC103046684 LOC106605923,LOC107589412,LOC107582081,LOC107699547,LOC108429942 other upstream 35650 9700740 ~ 9704709 (+)
LOC103046991 celf3a,LOC108437918,LOC107750801,LOC108272714 other upstream 101443 9603327 ~ 9638916 (+)
mrps21 mrps21 other upstream 200711 9534429 ~ 9539648 (+)
G196232 NA other upstream 1060389 8679284 ~ 8679970 (+)
LOC103026923 si:ch211-39a7.1,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611,LOC108273254,LOC107589479 other downstream 33611 9774379 ~ 9888217 (+)
dpm3 dpm3,LOC107678800,LOC107693280,LOC107750811 other downstream 317371 10058139 ~ 10061099 (+)
G196633 NA other downstream 750778 10491546 ~ 10492101 (+)
samd14 samd14 other downstream 1270273 11011041 ~ 11031269 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other downstream 1661387 11402155 ~ 11417703 (+)

Expression


Co-expression Network