G196421


Basic Information

Item Value
gene id G196421
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 9741340 ~ 9741835 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU266522
ctggtgctgctgttctcccactgcacacggtcactcaggtttgtggacggtggagtgggtggatgccagtgtttcagggagcctccatgtctatgttaccttctggctctctgcctttagttaggctgttttatttagatctgccggagtcatttgccacactctgataatgttttatattctctgttttacataaatccagtcaaaactaattccatctctctgccttcctctgagttactgactgcccacctgtctgacccgataccgagggatgttggaccctcaggctctcatgtcctctgtctggccagactggaagtttctgaagtcagctcttctccatccaccaccacagatcagctgctcatcatccatcttactctataagccattagtggagctgctatacacctgaatatataaaacctatgtggatgtatgaaagactttttaaaattaatttaaaagccatttgaccagtggtaggatggtc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU266522 True 496 lncRNA 0.46 1 9741340 9741835

Neighbor

gene id symbol gene type direction distance location
LOC103047595 cers2,LOC103047595,LOC108437916,LOC107750802,LOC107599505,LOC107693338,LOC107678801,LOC107739494 coding upstream 63520 9642177 ~ 9677820 (+)
LOC103027509 NA coding upstream 150430 9560563 ~ 9590910 (+)
LOC111195503 NA coding upstream 182233 9544700 ~ 9559107 (+)
LOC103023391 hcn3,LOC108437924,LOC107739502,LOC107656480,LOC107599514 coding upstream 392623 9339117 ~ 9348717 (+)
trnav-cac_44 NA coding upstream 789775 8951493 ~ 8951565 (+)
LOC103044437 trim46,trim46b,LOC108437912,LOC108272350,LOC107589413,LOC107750805,LOC107693334 coding downstream 244967 9986802 ~ 10014297 (+)
LOC111195551 NA coding downstream 438618 10180453 ~ 10181232 (+)
trnap-ugg_5 NA coding downstream 473156 10214991 ~ 10215062 (+)
trnap-agg_7 NA coding downstream 473313 10215148 ~ 10215219 (+)
trnap-agg_8 NA coding downstream 473514 10215349 ~ 10215419 (+)
G196418 NA non-coding upstream 6667 9730778 ~ 9734673 (+)
G196416 NA non-coding upstream 14336 9725113 ~ 9727004 (+)
G196417 NA non-coding upstream 17011 9723803 ~ 9724329 (+)
G196411 NA non-coding upstream 28699 9711890 ~ 9712641 (+)
G196396 NA non-coding upstream 132519 9607522 ~ 9608821 (+)
G196464 NA non-coding downstream 31673 9773508 ~ 9773769 (+)
G196467 NA non-coding downstream 44225 9786060 ~ 9801363 (+)
G196473 NA non-coding downstream 159332 9901167 ~ 9928316 (+)
G196531 NA non-coding downstream 339177 10081012 ~ 10084775 (+)
G196534 NA non-coding downstream 388667 10130502 ~ 10130764 (+)
G196419 NA other upstream 572 9740359 ~ 9740768 (+)
G196415 NA other upstream 20070 9720783 ~ 9721270 (+)
LOC103046684 LOC106605923,LOC107589412,LOC107582081,LOC107699547,LOC108429942 other upstream 36631 9700740 ~ 9704709 (+)
LOC103046991 celf3a,LOC108437918,LOC107750801,LOC108272714 other upstream 102424 9603327 ~ 9638916 (+)
mrps21 mrps21 other upstream 201692 9534429 ~ 9539648 (+)
LOC103026923 si:ch211-39a7.1,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611,LOC108273254,LOC107589479 other downstream 32544 9774379 ~ 9888217 (+)
dpm3 dpm3,LOC107678800,LOC107693280,LOC107750811 other downstream 316304 10058139 ~ 10061099 (+)
G196633 NA other downstream 749711 10491546 ~ 10492101 (+)
samd14 samd14 other downstream 1269206 11011041 ~ 11031269 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other downstream 1660320 11402155 ~ 11417703 (+)

Expression


Co-expression Network