G196531


Basic Information

Item Value
gene id G196531
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 10081012 ~ 10084775 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU266680
tcttatataatactctatatatacataatatacattttacattacatacaaaaGACAGGTAAGGTCTGAGAAAAAGACAGGAGTGACTCAATAGTTAGTCATGTACACTTGCGTCAGTCGTACAAACAATCGTTCAGAACATCAGCTACAACAGCTACACTGGATGCTGTGTTGTCGGAGTTAATGTGTGTGCTTGGATGTGTAGTAGAGGAGTGTGTgtcgtttgtgtgtgtgtgtttgcgtgtggtAAATATGTACCAATTCATATACTGTACTTGAGTTAGTGGGCAGGAGTTTATAGTATACTCAAATATTGTTATAAAGGCATTTTTGGTCAATTGTTGATAATTGTTATAAGGTGAAGACGTATGTTATGTCGTCATTTTTCAATGAGTATTAGGATTACTAACTTGCTTGCTGGTCTAAACCTGTAGAAGAGGCTCATGTAGTGTCATGTCAGATGGTGTGATCTATTGGTTTCATCAGGCTGTTAGCTTTTACACTGGaatgccataaaaaaaaaaataaaaaaaaatcatggaacaGGCCCTAGTATTGTGCCCCCAGGTTTTGAACACGTCCTTTGAAATACAGAGTTGCTTATCTGTTGGACAAATTTAATAGACAAATTTAGCTAGATGTTgttggtcacaatcattaccacccactgcgctgtccactgtggtggtaatgcctttgttgttgtaaaaaatatatatatttcacacttctactcagtgataaaattcttgcatccggactacaagtgagttttttggctttcttggtcacatgacatcgcattcagtagctcctccatttccactggcTGTTGTAATTACATGGATCTCCGCAGAAATGCACACCCAAAGCGtagcagtgaacaaatagctattttataaaaaaaaaaaaaaaaaaaaacgtgaggTGATGAAACGCAGAGATGTCagtctggacaggaataaaattaccggaggaccacagatttcagcaaaaaacagtagataattcagcctgtaattttctcaaagaatgtctgagaaagagaaaaaaaaaacgtgaaaattaccccaggaccccctgagaaactaatcccatccggatagggttTAAGACATATTTCCAGTACACACAAGTTGTGTCACTGCGGATTGAGGATCATTAAAAGtctcatccatctggcacccactatcagtcctcgctctacctccagtgccagtgtttaacctaaatcacaagataacacctcacaatgtatAAATTTGAGGGCAGTGTTCCCTGAAATAACACTTTATGATGAATTTGGGACACTACCCCAAcccatcccatgacttttggcatatcagtatATTGTGTTGGTTAAGAACAGACAATGCAATTTAGTCATTTGGTGCCATTACAGAAATGATCCAATAGAATAGAAACGTTTTTCACTTTAAATACTGACCACAGAACTCCATAGGCCAGCTAAACCCCGCCCACTCACCCaccactaccactactactactcctcCTCCCCCTTCACccccacacacatccacacacactcgctcctCTGGTAAAAGTGTGTAAATTTGGCAGATTAACACgaattctctctttttctctccttcacTCACATACACTGTTCATTCATTCGCTCTGtaaaacacactcactcactctttcctttcttccttcttcggtttcacacagtaaacatttctcttctcttctttttagtTCATTATATACAACACTGTGTTCATAACTTATGAACGCTTTACAAAcgctttaaacaaaaaaaaattaaaaataattgtacaaAAGTGACACAGGTTAAGTGTGTGTTGGATGGTAAACTGCTTTCCTTTTCAGTCTCTTTCACAGTAAAGTTGTGTAAGGAATTAACTGCGCGAGTGAGAGGTTCAAACTCCAAAGTACTAGGTAGTTTTATTGGGTTATATTAATTTGATGGCGAGTTCCAAGGTATTCTAGCTTATTTCCACTGAAATGAAATGCCCGGAAGGTTCTGTGTATTGACTGGATCAGTgctgtattattcagtattaattcCAAAGTGCTGTAAAACTGTTATGAACATGGTATGGTAATAAAAGTACCTGCTGAAGAATCCAGCTCAATGCCAGCTTtagctggtagctggttttaatGATGGTCTAAGCTAGTCTTTGATGGTCAAGAAAGCTGGGAAGTGTGCTGTCCAGGTAAAACAACCAGAATTATgggtaattttttatttaaatttaaatttaatggactTGCAGGTCATCAAACTTGTCGTTGGTTGGTAATTTGAGTTGAGTTTGGTCAAGCTAGTTATGCTGCTCAACCagtctggtcatgctggttgaccaatgTGGTCGCATTGGTTGCCAAACTTGGTCAGATTGGTCAAGCTGTTAGACCAGCTAAAACATAACGTTCATCAAAAAAGCATGAAAGCACAATCTTAATCTTAACCAGCATAATTTGGCCTGGCAAATGAAAACCATGCATCTCCAAAATGgtgactttacaggagaagtCAAAAATGTTCTTAAGTTTTttataatgggaaaaaaaaagaaaaaaaaaaaaagagtttttccaaagtacatttagagcatttgttttggTCTATTCAGCCATACTTAGAGAAATGATACAAGCTACAGGATTTAAGTAATGGAGAAAtcttaaaacagacaaaaaaatgagattcaattttaaaaaatggggggaaaaaactgaaatgcatgtttttcatcGGACAACAGAGATTTACTGTAAAAGTCTCTTCAACAGTCTAGTTCCCGGGACTTAGGAGGGATTTTTTCTAACTACATTCCTAGTTAAATGAGCTTACTTAGAAGTCAGACTGTCTGGCAACTGTCTCAGAACTCACCATCACTAAAACCTTAAATGGGTATAAAGTATTTTAGAGATTGTACCTCATGCTCACCAGGCTACAACCTACAACCTAGACCTGAagagactgtaaaagaaagttTTACCATCACCCATAGCATCAGCCTGTTCAGCATCTGTCTTTTGTGTCTAGTGCCGATACCAGTTCAGTGCTGATACCAGCACTCAGTCCAGTTGATCTgaaaacatgtatatatataaaaaaaacaccctgcttctctgctgctgctacatGGAGAAATCCCACTGGAAAAATACAATACGAGACAAAAACAAAAGGTTGGATCGTTGTACACTTTAGCGAGAAGCTCTTGGTCTTTGGCTCATTAGATAGTCAATGTGCATCCATTTTCTCACTACCAAAAAAACATCCTCTTTCTTCTTCGCCGTTCTTCAGTTCACTGTTCCTCCAAAAGTTGAGTGCTTTTCCAAAGAGTTGTCAAAAAAGTTTACGCAAAAGATGGAGCGTTTGCCTTTACGAAAAAAATACCAAACATCGTAGAAAGGTAAgagggtttaaaaaaagaacaatccCTCTCGGATCCAGTAAACTCGTTCAGTTCAGACTGAAAAGTACTGGAGCGCTTCCTCCGCTTTTCCTCTCCCTAGTGGCCAGCACTGGGCTTTTTGAGAACTCCTCCTGTGATTTTAGGTCCACACAGGCCACCGTCATTGTAGTCTTAGAGACAAGTGTTTTGGGATGTGTAGTCCTTCAAAAGTTCTTACTGCAAGACCAGCAATAATAATACGGGGAGCAGCGTCGTGAGGAGGGTGAAGGATGCTAGTGTGACTGCAGAGTTTTTTCGCACACTTTTCT
>TU266681
tcttatataatactctatatatacataatatacattttacattacatacaaaaGACAGGTAAGGTCTGAGAAAAAGACAGGAGTGACTCAATAGTTAGTCATGTACACTTGCGTCAGTCGTACAAACAATCGTTCAGAACATCAGCTACAACAGCTACACTGGATGCTGTGTTGTCGGAGTTAATGTGTGTGCTTGGATGTGTAGTAGAGGAGTGTGTgtcgtttgtgtgtgtgtgtttgcgtgtggtAAATATGTACCAATTCATATACTGTACTTGAGTTAGTGGGCAGGAGTTTATAGTATACTCAAATATTGTTATAAAGGCATTTTTGGTCAATTGTTGATAATTGTTATAAGGTGAAGACGTATGTTATGTCGTCATTTTTCAATGAGTATTAGGATTACTAACTTGCTTGCTGGTCTAAACCTGTAGAAGAGGCTCATGTAGTGTCATGTCAGATGGTGTGATCTATTGGTTTCATCAGGCTGTTAGCTTTTACACTGGaatgccataaaaaaaaaaataaaaaaaaatcatggaacaGGCCCTAGTATTGTGCCCCCAGGTTTTGAACACGTCCTTTGAAATACAGAGTTGCTTATCTGTTGGACAAATTTAATAGACAAATTTAGCTAGATGTTgttggtcacaatcattaccacccactgcgctgtccactgtggtggtaatgcctttgttgttgtaaaaaatatatatatttcacacttctactcagtgataaaattcttgcatccggactacaagtgagttttttggctttcttggtcacatgacatcgcattcagtagctcctccatttccactggcTGTTGTAATTACATGGATCTCCGCAGAAATGCACACCCAAAGCGtagcagtgaacaaatagctattttataaaaaaaaaaaaaaaaaaaaacgtgaggTGATGAAACGCAGAGATGTCagtctggacaggaataaaattaccggaggaccacagatttcagcaaaaaacagtagataattcagcctgtaattttctcaaagaatgtctgagaaagagaaaaaaaaaacgtgaaaattaccccaggaccccctgagaaactaatcccatccggatagggttTAAGACATATTTCCAGTACACACAAGTTGTGTCACTGCGGATTGAGGATCATTAAAAGtctcatccatctggcacccactatcagtcctcgctctacctccagtgccagtgtttaacctaaatcacaagataacacctcacaatgtatAAATTTGAGGGCAGTGTTCCCTGAAATAACACTTTATGATGAATTTGGGACACTACCCCAAcccatcccatgacttttggcatatcagtatATTGTGTTGGTTAAGAACAGACAATGCAATTTAGTCATTTGGTGCCATTACAGAAATGATCCAATAGAATAGAAACGTTTTTCACTTTAAATACTGACCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU266680 True 3727 lncRNA 0.39 2 10081012 10084775
TU266681 False 1451 lncRNA 0.38 2 10081012 10082499

Neighbor

gene id symbol gene type direction distance location
LOC103044437 trim46,trim46b,LOC108437912,LOC108272350,LOC107589413,LOC107750805,LOC107693334 coding upstream 66715 9986802 ~ 10014297 (+)
LOC103047595 cers2,LOC103047595,LOC108437916,LOC107750802,LOC107599505,LOC107693338,LOC107678801,LOC107739494 coding upstream 403192 9642177 ~ 9677820 (+)
LOC103027509 NA coding upstream 490102 9560563 ~ 9590910 (+)
LOC111195503 NA coding upstream 521905 9544700 ~ 9559107 (+)
LOC103023391 hcn3,LOC108437924,LOC107739502,LOC107656480,LOC107599514 coding upstream 732295 9339117 ~ 9348717 (+)
LOC111195551 NA coding downstream 95678 10180453 ~ 10181232 (+)
trnap-ugg_5 NA coding downstream 130216 10214991 ~ 10215062 (+)
trnap-agg_7 NA coding downstream 130373 10215148 ~ 10215219 (+)
trnap-agg_8 NA coding downstream 130574 10215349 ~ 10215419 (+)
trnap-ugg_6 NA coding downstream 130889 10215664 ~ 10215736 (+)
G196473 NA non-coding upstream 152696 9901167 ~ 9928316 (+)
G196467 NA non-coding upstream 279649 9786060 ~ 9801363 (+)
G196464 NA non-coding upstream 307243 9773508 ~ 9773769 (+)
G196421 NA non-coding upstream 339177 9741340 ~ 9741835 (+)
G196418 NA non-coding upstream 346339 9730778 ~ 9734673 (+)
G196534 NA non-coding downstream 45727 10130502 ~ 10130764 (+)
G196570 NA non-coding downstream 159366 10244141 ~ 10248266 (+)
G196572 NA non-coding downstream 176799 10261574 ~ 10261843 (+)
G196573 jupb,LOC108438403,LOC107562513,LOC107666348,LOC107665165,LOC107549862 non-coding downstream 178262 10263037 ~ 10263379 (+)
G196618 NA non-coding downstream 385023 10469798 ~ 10470148 (+)
dpm3 dpm3,LOC107678800,LOC107693280,LOC107750811 other upstream 19913 10058139 ~ 10061099 (+)
LOC103026923 si:ch211-39a7.1,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611,LOC108273254,LOC107589479 other upstream 192795 9774379 ~ 9888217 (+)
G196419 NA other upstream 340244 9740359 ~ 9740768 (+)
G196415 NA other upstream 359742 9720783 ~ 9721270 (+)
LOC103046684 LOC106605923,LOC107589412,LOC107582081,LOC107699547,LOC108429942 other upstream 376303 9700740 ~ 9704709 (+)
G196633 NA other downstream 406771 10491546 ~ 10492101 (+)
samd14 samd14 other downstream 926266 11011041 ~ 11031269 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other downstream 1317380 11402155 ~ 11417703 (+)
polr2k NA other downstream 1466885 11551660 ~ 11554583 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other downstream 1602624 11687399 ~ 11746235 (+)

Expression


Co-expression Network