G196633


Basic Information

Item Value
gene id G196633
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 10491546 ~ 10492101 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU266794
ggaacatggacggtgggcaccgctggcacaggaacatggacggtgtctggcaccgctggcatcgtagcaggagcggtgggcaccgctggcatcgtagcaggagcggtgggcaccgctggcatcgtagcatgggcggtgggcaccgctggcacaggaacattggcggtgggcaccgctggcacaggaacattggcggtgggccaccgctggcacaggaacattggcggtgggcaccgctggcacaggaacattggcggtgggcaccgctggcacaggaacattggcggtgggcaccgctggcatcgtagcatgggcggtgggcaccgctggcacaggaacattggcggtgggcaccgctggcacaggaacatggacggtgggcaccgctggcacaggaacattggcggtgggcaccgctggcatcgtagcatgggcggtgggcaccgctggcacaggaacattggcggtgggcaccgctggcatcgtagcatgggcggtgggcaccgctggcacaggaacattggcggtgggcaccgctggcacaggaacattggcg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU266794 True 556 TUCP 0.67 1 10491546 10492101

Neighbor

gene id symbol gene type direction distance location
trnap-agg_20 NA coding upstream 263743 10227734 ~ 10227803 (+)
trnap-agg_19 NA coding upstream 264052 10227422 ~ 10227494 (+)
trnap-agg_18 NA coding upstream 264370 10227106 ~ 10227176 (+)
trnap-agg_17 NA coding upstream 265846 10225630 ~ 10225700 (+)
trnap-agg_16 NA coding upstream 271600 10219875 ~ 10219946 (+)
LOC103044360 LOC108438405,LOC108438407,LOC107753917,LOC107727715,LOC107666325 coding downstream 23694 10515795 ~ 10518308 (+)
LOC107197050 LOC108438408,LOC108256995,LOC108256994,LOC108438412,LOC107666325,LOC108438409 coding downstream 44379 10536480 ~ 10539349 (+)
LOC107197051 LOC108438408,LOC108256995,LOC108256994,LOC108438412,LOC107666325,LOC107563034 coding downstream 53475 10545576 ~ 10563252 (+)
LOC103043362 LOC108438408,LOC108256995,LOC108256994,LOC108438412,LOC107666325,LOC107563034 coding downstream 78202 10570303 ~ 10573156 (+)
LOC103042831 LOC108438410,LOC108257051 coding downstream 101634 10593735 ~ 10598163 (+)
G196619 eif1b,LOC103043673,LOC107549864,LOC107666344,LOC107665169 non-coding upstream 6781 10481407 ~ 10484765 (+)
G196618 NA non-coding upstream 21398 10469798 ~ 10470148 (+)
G196573 jupb,LOC108438403,LOC107562513,LOC107666348,LOC107665165,LOC107549862 non-coding upstream 228167 10263037 ~ 10263379 (+)
G196572 NA non-coding upstream 229703 10261574 ~ 10261843 (+)
G196570 NA non-coding upstream 243280 10244141 ~ 10248266 (+)
G196649 NA non-coding downstream 135266 10627367 ~ 10628051 (+)
LOC111195506 NA non-coding downstream 140254 10632355 ~ 10637265 (+)
G196686 NA non-coding downstream 287049 10779150 ~ 10781295 (+)
G196687 NA non-coding downstream 293059 10785160 ~ 10811742 (+)
G196697 NA non-coding downstream 346813 10838914 ~ 10856867 (+)
dpm3 dpm3,LOC107678800,LOC107693280,LOC107750811 other upstream 430447 10058139 ~ 10061099 (+)
LOC103026923 si:ch211-39a7.1,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611,LOC108273254,LOC107589479 other upstream 603329 9774379 ~ 9888217 (+)
G196419 NA other upstream 750778 9740359 ~ 9740768 (+)
G196415 NA other upstream 770276 9720783 ~ 9721270 (+)
LOC103046684 LOC106605923,LOC107589412,LOC107582081,LOC107699547,LOC108429942 other upstream 786837 9700740 ~ 9704709 (+)
samd14 samd14 other downstream 518940 11011041 ~ 11031269 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other downstream 910054 11402155 ~ 11417703 (+)
polr2k NA other downstream 1059559 11551660 ~ 11554583 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other downstream 1195298 11687399 ~ 11746235 (+)
G197106 NA other downstream 2223267 12715368 ~ 12774496 (+)

Expression


Co-expression Network