G196686


Basic Information

Item Value
gene id G196686
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 10779150 ~ 10781295 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU266917
ttagcaaccacttagcaaacacctggaaaacgttagcaactgcctagcaaccacttagcaaccacttagcaactgcctagcaaccactggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacttggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaatacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaatatgttagcaactgcctagcaaccacttagcaaccactt
>TU266918
ttagcaaccacttagcaaacacctggaaaacgttagcaactgcctagcaaccacttagcaaccacttagcaactgcctagcaaccactggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacttggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaatacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaatatgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccactggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaatacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaatatgttagcaactgcctagcaaccacttagcaaccactt
>TU266932
ttagcaaccacttagcaaacacctggaaaacgttagcaactgcctagcaaccacttagcaaccacttagcaactgcctagcaaccactggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacttggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaatacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaatatgttagcaactacctagcaaccacttagcaaccacctggaaaatgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaatacgttagcatttgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaacaacttagcaac
>TU266937
ttagcaaccacttagcaaacacctggaaaacgttagcaactgcctagcaaccacttagcaaccacttagcaactgcctagcaaccactggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacttggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaatacgttagcaactgcctagcaaccacttagcaaccacctggaaaatgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaatacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaactgcctagcaaccacctggaatacgttagcaactgcctagcaaccacttagcaaccacctggaaaacgttagcaactgcctaggcaaccacttagcaactgcctaggcaaccacctggaatatgttagcaactgcctagcaaccacttagcaaccactt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU266917 False 336 lncRNA 0.48 3 10779150 10781295
TU266918 False 626 lncRNA 0.48 3 10779150 10781295
TU266932 False 514 lncRNA 0.48 2 10779150 10780191
TU266937 True 629 lncRNA 0.49 3 10779150 10781295

Neighbor

gene id symbol gene type direction distance location
LOC103040077 NA coding upstream 8117 10740887 ~ 10771033 (+)
LOC103040599 LOC108412773,LOC107563026,LOC107666327,LOC107753959,LOC108257022,LOC107665149,LOC107727719,LOC107549872 coding upstream 152733 10610474 ~ 10626417 (+)
LOC103042831 LOC108438410,LOC108257051 coding upstream 180987 10593735 ~ 10598163 (+)
LOC103043362 LOC108438408,LOC108256995,LOC108256994,LOC108438412,LOC107666325,LOC107563034 coding upstream 205994 10570303 ~ 10573156 (+)
LOC107197051 LOC108438408,LOC108256995,LOC108256994,LOC108438412,LOC107666325,LOC107563034 coding upstream 215898 10545576 ~ 10563252 (+)
LOC103032369 si:dkeyp-113d7.1,LOC103032369,LOC107727714,LOC107549870,LOC107563030,LOC105913040 coding downstream 14827 10796122 ~ 10803111 (+)
LOC103032890 mbtd1,LOC106607505,LOC106600809 coding downstream 37742 10819037 ~ 10838287 (+)
utp18 utp18 coding downstream 83443 10864738 ~ 10878687 (+)
LOC103035340 LOC108438873 coding downstream 100480 10881775 ~ 10902503 (+)
ube2m ube2m,ubc12,LOC107694448,LOC107570967,LOC107573069 coding downstream 160343 10941638 ~ 10954911 (+)
LOC111195506 NA non-coding upstream 141885 10632355 ~ 10637265 (+)
G196649 NA non-coding upstream 151099 10627367 ~ 10628051 (+)
G196619 eif1b,LOC103043673,LOC107549864,LOC107666344,LOC107665169 non-coding upstream 294385 10481407 ~ 10484765 (+)
G196618 NA non-coding upstream 309002 10469798 ~ 10470148 (+)
G196573 jupb,LOC108438403,LOC107562513,LOC107666348,LOC107665165,LOC107549862 non-coding upstream 515771 10263037 ~ 10263379 (+)
G196687 NA non-coding downstream 3865 10785160 ~ 10811742 (+)
G196697 NA non-coding downstream 57619 10838914 ~ 10856867 (+)
G196684 NA non-coding downstream 64763 10846058 ~ 10863254 (+)
G196702 NA non-coding downstream 122761 10904056 ~ 10906225 (+)
G196712 NA non-coding downstream 174715 10956010 ~ 10957037 (+)
G196633 NA other upstream 287049 10491546 ~ 10492101 (+)
dpm3 dpm3,LOC107678800,LOC107693280,LOC107750811 other upstream 718051 10058139 ~ 10061099 (+)
LOC103026923 si:ch211-39a7.1,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611,LOC108273254,LOC107589479 other upstream 890933 9774379 ~ 9888217 (+)
G196419 NA other upstream 1038382 9740359 ~ 9740768 (+)
G196415 NA other upstream 1057880 9720783 ~ 9721270 (+)
samd14 samd14 other downstream 229746 11011041 ~ 11031269 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other downstream 620860 11402155 ~ 11417703 (+)
polr2k NA other downstream 770365 11551660 ~ 11554583 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other downstream 906104 11687399 ~ 11746235 (+)
G197106 NA other downstream 1934073 12715368 ~ 12774496 (+)

Expression


Co-expression Network