G196687


Basic Information

Item Value
gene id G196687
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 10785160 ~ 10811742 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU266938
gtttaactaGAGATGGCAATAACGATCAGCTATGTATCACATTGGCCGCTAGACTGAACTATAGAGCTGGCTGCAAACATGCATTCCCAGCCATTGTCTTATTCTTCTGCTTGGCTTGTTTGTTTTGCCGTTTCTAAATCAGTCTTGTGCATTtctaaaatgtgtaaaactaatgcACCTCATGGAGGGAAGTGACTAAAGACTAGTAATGGCCCACTAACTGGATTCCCCTCTTAAGAGTGCATCTTTCAGCTTGTACAGTGAGTAGTTACAAGCACAGCAACACAACAGAGCGGCACATTACATTCACGGCACATTACATGAACAGGTTTGCCTGAAAAGGTTAGTGTGGCATTTAGCAAACTCTGCAATTGGTTAAGTGTTTAGCCACAAAAACACGGATCAGTCCATCTCTAGTTTTACAGTCAAGTACTGAAGGTATGTTAAGCTAAGGTGTTAATTTCACACCTTTAGCAGAGAATGCACAATTACTGTGAACTCTAAAATTTAGGAAGGGGGTGGAAAGTTTGTGAAAAAATTATAGAAAGGTTTTGTTAAACTATGTTGTTTTATTAGTGTCGCTTGAATATGAATGGAAACATCAAGACAGAAAGATCAGATTTGAACAATCAATCCAAACCAAGCAATAAGGCCTGAAAAATGAACAGAGATGAATGTGTAGGACAGAAGGCCCACTTCATTACCGCAAGCCACAGTGATGTTTTAGCATGTTTTTGTAGcatgtgatatttttttttcgtgTCCTTGTTTTTTATAAGACTGCATTGGGTTTAATTACCACACACTGAACTGTTAAGGAAATAAATGTACTAGGTCAAAACGATTAAAGAGGTATTGCATTGATTTTTGCACAAAGACTATCTGAgcatctcttatttttatttttgacgtTCATAAGCTGCTTGGAACTAAGAGGAGCAAAGTTAAGTCCTTCAGACATCTCACAAGTTGTTGGAAGAAATTGGAAAATTTTAAACCCACATTCAGAGAAACTGTATCACACACTTCAGGTTCTATCTCAATTCACATGTTTACAGAGTAATATTACCTGATACCCGTGACACAGTTCTCTCCTTAGTCGAATGAAAAGCAGAAGAAATGAGTGTGAAGTAAGTCTTGGTGCCAAAACAATGAAGTACCTtatgctgtatatataaacccttttataaaataattttttttgtgctttttacaaAGGATGCACAACATAAACAAATAGGCGTATACTCTGGTTAGAATGTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU266938 True 1264 lncRNA 0.37 2 10785160 10811742

Neighbor

gene id symbol gene type direction distance location
LOC103040077 NA coding upstream 14127 10740887 ~ 10771033 (+)
LOC103040599 LOC108412773,LOC107563026,LOC107666327,LOC107753959,LOC108257022,LOC107665149,LOC107727719,LOC107549872 coding upstream 158743 10610474 ~ 10626417 (+)
LOC103042831 LOC108438410,LOC108257051 coding upstream 186997 10593735 ~ 10598163 (+)
LOC103043362 LOC108438408,LOC108256995,LOC108256994,LOC108438412,LOC107666325,LOC107563034 coding upstream 212004 10570303 ~ 10573156 (+)
LOC107197051 LOC108438408,LOC108256995,LOC108256994,LOC108438412,LOC107666325,LOC107563034 coding upstream 221908 10545576 ~ 10563252 (+)
LOC103032890 mbtd1,LOC106607505,LOC106600809 coding downstream 7295 10819037 ~ 10838287 (+)
utp18 utp18 coding downstream 52996 10864738 ~ 10878687 (+)
LOC103035340 LOC108438873 coding downstream 70033 10881775 ~ 10902503 (+)
ube2m ube2m,ubc12,LOC107694448,LOC107570967,LOC107573069 coding downstream 129896 10941638 ~ 10954911 (+)
kpnb1 kpnb1,LOC107570969,LOC107703644,LOC107573070 coding downstream 147124 10958866 ~ 10977959 (+)
G196686 NA non-coding upstream 3865 10779150 ~ 10781295 (+)
LOC111195506 NA non-coding upstream 147895 10632355 ~ 10637265 (+)
G196649 NA non-coding upstream 157109 10627367 ~ 10628051 (+)
G196619 eif1b,LOC103043673,LOC107549864,LOC107666344,LOC107665169 non-coding upstream 300395 10481407 ~ 10484765 (+)
G196618 NA non-coding upstream 315012 10469798 ~ 10470148 (+)
G196697 NA non-coding downstream 27172 10838914 ~ 10856867 (+)
G196684 NA non-coding downstream 34316 10846058 ~ 10863254 (+)
G196702 NA non-coding downstream 92314 10904056 ~ 10906225 (+)
G196712 NA non-coding downstream 144268 10956010 ~ 10957037 (+)
G196727 psmd3,LOC107573823 non-coding downstream 231212 11042954 ~ 11048830 (+)
G196633 NA other upstream 293059 10491546 ~ 10492101 (+)
dpm3 dpm3,LOC107678800,LOC107693280,LOC107750811 other upstream 724061 10058139 ~ 10061099 (+)
LOC103026923 si:ch211-39a7.1,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611,LOC108273254,LOC107589479 other upstream 896943 9774379 ~ 9888217 (+)
G196419 NA other upstream 1044392 9740359 ~ 9740768 (+)
G196415 NA other upstream 1063890 9720783 ~ 9721270 (+)
samd14 samd14 other downstream 199299 11011041 ~ 11031269 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other downstream 590413 11402155 ~ 11417703 (+)
polr2k NA other downstream 739918 11551660 ~ 11554583 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other downstream 875657 11687399 ~ 11746235 (+)
G197106 NA other downstream 1903626 12715368 ~ 12774496 (+)

Expression


Co-expression Network