G196702


Basic Information

Item Value
gene id G196702
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 10904056 ~ 10906225 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU266957
AAGGTGCAAAATGAAAACAGCAGGAATAAAAACAAACCCCATTGTCTTTATTTAGTTAGTCATTTTACAGTAGTCACTCTTAAAGTAGCTGCCTTgaggttttttcttttttcctgccttttttttctcatcgTTTCAATTTGTCATCCTCCCTTTGATCAACACGAAGGAAGAAACAATggaaaaagaatgagaaaaacaaccaaaaaaaagaaaagtaaagaaatggatttaaaaaaatgccccTGAacgaagaagaaaagaggaatTTGGCAAGAGATTCGTTCTCGCGAGAGATTTCATTCCAACCCTGTGCTGAACAGTTTGGTTCGGACAATGCTGGAGGTAATGgtggggtgagaaaaaaaaaacggaagcCCCTCAAACACGGTTGAGACCCTGTTTTGCCAATTTGGTAAACTTAgaaacagtcttttttttttcttttcaataaaCATACAAACTAATAAATACTGTCTAAACTCTCTTAACTCAAACAAAGGGAGTAACGGGAATGTGAACAGTTCTGAACTTGGTTCTGTCCTCACAGGTTTTTAAGGCTGTGTGTCCAATGCAGTTCCGGatgaacattgttttaaggGAGGTGCTGTTAGCATTTTAagctcaaaataaaaaaggggaTGTGGcctgagtaaaatttacatgacaaaagaaatagaaagaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU266957 True 686 lncRNA 0.36 2 10904056 10906225

Neighbor

gene id symbol gene type direction distance location
LOC103035340 LOC108438873 coding upstream 1553 10881775 ~ 10902503 (+)
utp18 utp18 coding upstream 25369 10864738 ~ 10878687 (+)
LOC103032890 mbtd1,LOC106607505,LOC106600809 coding upstream 65769 10819037 ~ 10838287 (+)
LOC103032369 si:dkeyp-113d7.1,LOC103032369,LOC107727714,LOC107549870,LOC107563030,LOC105913040 coding upstream 100945 10796122 ~ 10803111 (+)
LOC103040077 NA coding upstream 133023 10740887 ~ 10771033 (+)
ube2m ube2m,ubc12,LOC107694448,LOC107570967,LOC107573069 coding downstream 35413 10941638 ~ 10954911 (+)
kpnb1 kpnb1,LOC107570969,LOC107703644,LOC107573070 coding downstream 52641 10958866 ~ 10977959 (+)
LOC103036776 LOC103036776 coding downstream 76359 10982584 ~ 11007579 (+)
ankle1 LOC107575641 coding downstream 146493 11052718 ~ 11062046 (+)
LOC103039714 LOC108442625 coding downstream 201816 11108041 ~ 11115372 (+)
G196684 NA non-coding upstream 40802 10846058 ~ 10863254 (+)
G196697 NA non-coding upstream 47189 10838914 ~ 10856867 (+)
G196687 NA non-coding upstream 92314 10785160 ~ 10811742 (+)
G196686 NA non-coding upstream 122761 10779150 ~ 10781295 (+)
LOC111195506 NA non-coding upstream 266791 10632355 ~ 10637265 (+)
G196712 NA non-coding downstream 49785 10956010 ~ 10957037 (+)
G196727 psmd3,LOC107573823 non-coding downstream 136729 11042954 ~ 11048830 (+)
G196728 NA non-coding downstream 144239 11050464 ~ 11051863 (+)
G196759 LOC108442629,LOC107669986,LOC107559715,LOC107693307,LOC107753478,LOC107589515 non-coding downstream 434682 11340907 ~ 11341624 (+)
G196762 mllt11 non-coding downstream 450312 11356537 ~ 11359180 (+)
G196633 NA other upstream 411955 10491546 ~ 10492101 (+)
dpm3 dpm3,LOC107678800,LOC107693280,LOC107750811 other upstream 842957 10058139 ~ 10061099 (+)
LOC103026923 si:ch211-39a7.1,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611,LOC108273254,LOC107589479 other upstream 1015839 9774379 ~ 9888217 (+)
G196419 NA other upstream 1163288 9740359 ~ 9740768 (+)
G196415 NA other upstream 1182786 9720783 ~ 9721270 (+)
samd14 samd14 other downstream 104816 11011041 ~ 11031269 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other downstream 495930 11402155 ~ 11417703 (+)
polr2k NA other downstream 645435 11551660 ~ 11554583 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other downstream 781174 11687399 ~ 11746235 (+)
G197106 NA other downstream 1809143 12715368 ~ 12774496 (+)

Expression


Co-expression Network