G196727 (psmd3,LOC107573823)


Basic Information

Item Value
gene id G196727
gene name psmd3,LOC107573823
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 11042954 ~ 11048830 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU266983
TTGTACACTGTATTCACTCTTGCGAAACAAACCACACATGGCCTTTACTAGAGCAGGAAGAGTCCTCTTACTGTACAGAGTCTCAGCCGTCAGCCAGGTTACATAAATCTGCAAAATTCCAGGTTGGGAAATTGTTAAATCATTTGAGAGTGACTCATAATTagactactactactgtttGGTGGACAAAATTGTTAACAGAAGCAGAACAGGTCAGTTCTCATCAACCTTTACATTTGCGTTATTATTCCAACCACAGAGACAGTCACACCTGCAGAAACACAAGATTACTGCAGAGATTACAAAAGTGAAAATGATCTCATCTCTAAGGATTTTACACCAACAACCACAGCCTGGCACAATCCATCCTGAATCTGAGGTTTCTTCCGgctttgatttgtattttttacacagATCTCGTATGAAGACTCAGAGGCTGTAGCTAATGATACAGCAGACCAGAAAAGGCTCATAAATGGATCAACGGAATATCAATATGCAAAACACAACAACAGTAATGAAGAATTTTGGGGGCTTCAAAAATGTAATAGTAAAATAAATGGAGCTGTATGGGCTTGCTGCAGGGCTGGGGATGAACATTTCTTTAGAGAGGACTGGAGCAGAACAGAAAGGCTAGATaaagaagaaagaggaaaaacacaGCGATCAGGTTTCTTCTGGCCCGTCAGATCACGGGAAACTGTCATCGTCATCTTCTGCCATTTCTTTAGCAAACTCAAGGTCCTGCTGCTCCCTTTCCCTTCGCTCCTGTGGAGagacaaaaaacaatatatgcAGTTTTAATTATTGAGATTCAGATTGATTACACA
>TU266984
TTGTACACTGTATTCACTCTTGCGAAACAAACCACACATGGCCTTTACTAGAGCAGGAAGAGTCCTCTTACTGTACAGAGTCTCAGCCGTCAGCCAGGTTACATAAATCTGCAAAATTCCAGGTTGGGAAATTGTTAAATCATTTGAGAGTGACTCATAATTagactactactactgtttGGTGGACAAAATTGTTAACAGAAGCAGAACAGGTCAGTTCTCATCAACCTTTACATTTGCGTTATTATTCCAACCACAGAGACAGTCACACCTGCAGAAACACAAGATTACTGCAGAGATTACAAAAGTGAAAATGATCTCATCTCTAAGGATTTTACACCAACAACCACAGCCTGGCACAATCCATCCTGAATCTGAGGTTTCTTCCGgctttgatttgtattttttacacagATCTCGTATGAAGACTCAGAGGCTGTAGCTAATGATACAGCAGACCAGAAAAGGCTCATAAATGGATCAACGGAATATCAATATGCAAAACACAACAACAGTAATGAAGAATTTTGGGGGCTTCAAAAATGTAATAGTAAAATAAATGGAGCTGTATGGGCTTGCTGCAGGGCTGGGGATGAACATTTCTTTAGAGAGGACTGGAGCAGAACAGAAAGGCTAGATaaagaagaaagaggaaaaacacaGCGATCAGGTTTCTTCTGGCCCGTCAGATCACGGGAAACTGTCATCGTCATCTTCTGCCATTTCTTTAGCAAACTCAAGGTCCTGCTGCTCCCTTTCCCTTCGCTCCTCGGCGGACTCCAGGTCTTTATTGTAGGCTTTAGGTGGAAATCTCATGGCCTTAACAGACATGTTGTGAATGTCCAGACAGAAGGAGATGCGCTGATGGAAAGCAAGCTGTGGCTCGCGTGTGCCGTATATGTCCATGGTCTCCTTTGACTGAACGTAACCCTTCTCATGGTTTATGCTGGCCTCAATAACTCCATCGCGGATTGCCTTGGCCACAATAAACTCGGCATCTTCAGGACTGTCCAGCTGTAGTTTCTGAGCGATGTCGGCCAGCGAGATACGGGAATAAGACAAGCTAATCATTCTTACACCTGTTTTGATGACATTGTGTCGCAGGCGGATGATGAGTGTGTAGGTGCCATCAGTCTGAAACTTCTCACCGAACTGATCCAAGGCCTGGTTAAACTTGGCCAAATTCCCAGTCCTCACCGCTTGAGTAAGGAGAAAGTAGGGCATGAGAGATCTCTTTAAAGAAGGCTGGCGGAACTGCAGCCTGTCAGGAATCTCCCCAAGCAACAACTCAACTACAATCAGCAGCTTATGCACAGTTTGTTTGAAGCCCACAGCGGTGTGCTGAGGGGCTTTGCGTAGTGCATTAGTCAGAGTCCTCCGGGCTTCTGAGTACTCCAGCTGGATGGCCTTAATACGTCCTGCAGTAGTAGAGGTATCGAGCCCACTCGTTGTTGTTGGCCAGCTCAGGAAAGACAGATTTGGACACCAATTTCTCTGCCTGGTCGTACAGGTTGTACTGCAGGTAGTTGCGCAGCAGCAGGTTCAGCAGGGTGGCTTGGCCGTCTGAATCGTGACGTAACGTGGCGGTCCTCAGGCGTGTGTGTAGAAAACTGC

Function

symbol description
psmd3 Predicted to enable enzyme regulator activity. Acts upstream of or within brain development; larval locomotory behavior; and otic vesicle development. Predicted to be part of proteasome regulatory particle, lid subcomplex. Orthologous to human PSMD3 (proteasome 26S subunit, non-ATPase 3).

NR:

description
PREDICTED: 26S proteasome non-ATPase regulatory subunit 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU266983 False 830 lncRNA 0.40 2 11042954 11043929
TU266984 True 1614 lncRNA 0.46 9 11042954 11048830

Neighbor

gene id symbol gene type direction distance location
LOC103036776 LOC103036776 coding upstream 35375 10982584 ~ 11007579 (+)
kpnb1 kpnb1,LOC107570969,LOC107703644,LOC107573070 coding upstream 64995 10958866 ~ 10977959 (+)
ube2m ube2m,ubc12,LOC107694448,LOC107570967,LOC107573069 coding upstream 88043 10941638 ~ 10954911 (+)
LOC103035340 LOC108438873 coding upstream 140451 10881775 ~ 10902503 (+)
utp18 utp18 coding upstream 164267 10864738 ~ 10878687 (+)
ankle1 LOC107575641 coding downstream 3888 11052718 ~ 11062046 (+)
LOC103039714 LOC108442625 coding downstream 59211 11108041 ~ 11115372 (+)
cdk12 cdk12,LOC106601005 coding downstream 151467 11200297 ~ 11239603 (+)
LOC103041779 ppp1r1b,LOC103041779,LOC108442635,LOC102193916,LOC101463831,LOC102293829 coding downstream 196126 11244956 ~ 11284551 (+)
stard3 stard3 coding downstream 242346 11291176 ~ 11317552 (+)
G196712 NA non-coding upstream 85917 10956010 ~ 10957037 (+)
G196702 NA non-coding upstream 136729 10904056 ~ 10906225 (+)
G196684 NA non-coding upstream 179700 10846058 ~ 10863254 (+)
G196697 NA non-coding upstream 186087 10838914 ~ 10856867 (+)
G196687 NA non-coding upstream 231212 10785160 ~ 10811742 (+)
G196728 NA non-coding downstream 1634 11050464 ~ 11051863 (+)
G196759 LOC108442629,LOC107669986,LOC107559715,LOC107693307,LOC107753478,LOC107589515 non-coding downstream 292077 11340907 ~ 11341624 (+)
G196762 mllt11 non-coding downstream 307707 11356537 ~ 11359180 (+)
G196914 NA non-coding downstream 413897 11462727 ~ 11483867 (+)
G196918 NA non-coding downstream 437987 11486817 ~ 11487100 (+)
samd14 samd14 other upstream 11685 11011041 ~ 11031269 (+)
G196633 NA other upstream 550853 10491546 ~ 10492101 (+)
dpm3 dpm3,LOC107678800,LOC107693280,LOC107750811 other upstream 981855 10058139 ~ 10061099 (+)
LOC103026923 si:ch211-39a7.1,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611,LOC108273254,LOC107589479 other upstream 1154737 9774379 ~ 9888217 (+)
G196419 NA other upstream 1302186 9740359 ~ 9740768 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other downstream 353325 11402155 ~ 11417703 (+)
polr2k NA other downstream 502830 11551660 ~ 11554583 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other downstream 638569 11687399 ~ 11746235 (+)
G197106 NA other downstream 1666538 12715368 ~ 12774496 (+)
LOC103029421 NA other downstream 1840528 12889358 ~ 12928527 (+)

Expression


Co-expression Network