G196914


Basic Information

Item Value
gene id G196914
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 11462727 ~ 11483867 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU267235
aaactgtgattaaaaaccagggttattccaacaaatattaatttctgaactcttaaaactttatgaatatgaacttgttttgtttgcatcatttgaggtctgaatgtgctgaaagccatttctaaattgctgcaaataaatgctctacatgacaatatttttctttggagTTATAGaaatttgtagtttatagaaaaaaacaacaatgttcattttactcaaacatatacctataaatagcaaaatcaaagaaactgattcagaaactgaagtggtctctttatttttttccatagctgtatttggtgtttttattgCAGTGAATCGATGTGTATACATTTTCTAAAGGTTCTGCTGTCTGTGTTGGCCTCAAAAACCCAGCCAAAGTGTTCATACCTCAGCAGAGagctttcctcctcctctctccttcACACATCATTTAACTCAATAAAACACATATCAGCCTCTTGAGGAACTAAATCTGCACATTTAGTTGTTTTCTTTCATAGACTGCTGAGGTACGGGTCCTGGTTTAGGAAGACCACACTGATTCTCTGTTTACACTTCTCTGGTAAAAGCTATGATGCAAATTACTTTGCCACCAAATCATTTtgaaatcgttttttttttgtaggagtGAAACAAGCTGTTTTGATGACTTAATCTAGAACAGTATCGAACAGCGCCAACACATTTTGGACATACTGAAGTTACAAATATTTAGGCAGTTTATTATAGTgctttgtgggttttttttaatcatgggTAAACTTAATGTTTTTGTCATAAGCCAAAAGCTCTTTTGTGGACCAGTTGGACCATAAAATCAGACTGTGTAGTTTGATGCATGTAGCTCTGATCActactctttatttatttaagggccacaaacctaaatactaatagaaa

Function

GO: NA

KEGG:

id description
ko00830 Retinol metabolism
ko00982 Drug metabolism - cytochrome P450

RNA

RNA id representative length rna type GC content exon number start site end site
TU267235 True 909 lncRNA 0.34 2 11462727 11483867

Neighbor

gene id symbol gene type direction distance location
lix1l lix1l,LOC107670024,LOC107729891,LOC107693252,LOC107716589 coding upstream 15250 11434179 ~ 11447477 (+)
prcc prcc coding upstream 36068 11419729 ~ 11426659 (+)
mindy1 fam63a,LOC106569905,LOC106588341 coding upstream 86722 11360987 ~ 11376005 (+)
sf3b4 sf3b4 coding upstream 115825 11343109 ~ 11346902 (+)
naxe naxe,LOC107693306,LOC107753479,LOC107669985,LOC107559716 coding upstream 127976 11329509 ~ 11334751 (+)
LOC103022883 LOC108438857 coding downstream 72205 11556072 ~ 11577909 (+)
LOC111195553 NA coding downstream 195064 11678931 ~ 11682473 (+)
psmg2 psmg2 coding downstream 329358 11813225 ~ 11821844 (+)
seh1l seh1l,LOC107668717,LOC107746927 coding downstream 368144 11852011 ~ 11862695 (+)
ldlrad4 ldlrad4,ldlrad4a,LOC107675658,LOC107668709,LOC107566561 coding downstream 390074 11873941 ~ 11991483 (+)
G196762 mllt11 non-coding upstream 103547 11356537 ~ 11359180 (+)
G196759 LOC108442629,LOC107669986,LOC107559715,LOC107693307,LOC107753478,LOC107589515 non-coding upstream 121103 11340907 ~ 11341624 (+)
G196728 NA non-coding upstream 410864 11050464 ~ 11051863 (+)
G196727 psmd3,LOC107573823 non-coding upstream 413897 11042954 ~ 11048830 (+)
G196712 NA non-coding upstream 505690 10956010 ~ 10957037 (+)
G196918 NA non-coding downstream 2950 11486817 ~ 11487100 (+)
G196923 NA non-coding downstream 9710 11493577 ~ 11500681 (+)
G196926 cpsf1,LOC107550069 non-coding downstream 26823 11510690 ~ 11516573 (+)
G196940 NA non-coding downstream 90164 11574031 ~ 11575281 (+)
G196939 LOC107738317 non-coding downstream 142515 11626382 ~ 11652875 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other upstream 45024 11402155 ~ 11417703 (+)
samd14 samd14 other upstream 431458 11011041 ~ 11031269 (+)
G196633 NA other upstream 970626 10491546 ~ 10492101 (+)
dpm3 dpm3,LOC107678800,LOC107693280,LOC107750811 other upstream 1401628 10058139 ~ 10061099 (+)
LOC103026923 si:ch211-39a7.1,LOC108437914,LOC107599586,LOC107678794,LOC107750809,LOC107693335,LOC107739611,LOC108273254,LOC107589479 other upstream 1574510 9774379 ~ 9888217 (+)
polr2k NA other downstream 67793 11551660 ~ 11554583 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other downstream 203532 11687399 ~ 11746235 (+)
G197106 NA other downstream 1231501 12715368 ~ 12774496 (+)
LOC103029421 NA other downstream 1405491 12889358 ~ 12928527 (+)
s100a14 s100a14,LOC108442988 other downstream 1472803 12956670 ~ 12964349 (+)

Expression


Co-expression Network