G196956 (ywhaz,LOC107672854,LOC107698656,LOC107550094,LOC107738323)


Basic Information

Item Value
gene id G196956
gene name ywhaz,LOC107672854,LOC107698656,LOC107550094,LOC107738323
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 11663050 ~ 11684544 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU267310
CCTGTCTGTGCTGatgtgtgtctgtggtgtggTCTGGTATCTTTTGTTATCTGACTCACCCAGGCATTGTTTCCCACTCATGCATATGTGAATAAGTCAGGATACTGAaacattactctctctctcacacacacacacacacacacacacacacacacatacacacacacacacacatacatatgcaCACGTACGTTCATGTTGGCTTCTTGGTGTAAACCACAGATCAAACAAGACTTCTCGATGTTTTCATGTAAATATGAAGCACATACAAAACAATATACTAAAAATCACCCTTTCCCTCACTTTTGTGCAGGGCTGCACAATacactgcttcttaataccttaACATGATCTTGGCCTTTGCAATACTGACATCACAGGCTGCGATATGCAAATGAGCCCTCTAGCCGACCTCTCTGATTATAAGTTAATGTGAGCATTCCACCCAGTTACAAACATATTAAGAATAAATTTCGGTGACATTACTTTGGTCACAAAAATGTACTAATGTGAATTGTTCATTTGGAGTTTTGCCTGTACTGTGCAGCCCTACTTTTGTGCCAAAGGAACCTCAAGTTCTCCAGACAGACCCCTGCCCAAAATGCACTCagtctcacatacacacatgcccacacatacactcacactctctttcaGTCACACTCCagtacaaatgcacacacactgaTGGCAGAGGCTGGTGAGGAGTAGTAGAGAGCGAGTCTCTCTGGTTGTTGAAGCGCTGACTGGAGTTTGTGGCCTTAGTTTTCTCGACCCTCCTCCGTATCCTCAACGTCCGGTTGATTGTCCGAGGTCCACagTGTCAGATTGTCTCTTAGTAACTGCATGATCAGCGTGCTGTCTTTGTATGAATCCTCAGTTAACTGGTCAAGCTCAGCAATCGCATCGTCAAAAGCCTTCTTGGCGAGTTCACAGGCCTGCTCTGGAGAGTTCAGGATTTCATAGAAGAAGACCGAGAAGTTGAGTGCGAGGCCGAGCCGGATGGGGTGGGTAGGCTGCATGTTGTCTTTGCTGATGTCAAATGCAGCCTGGTATGCTTCCTGTGACTTCTGGATGATGTTGGTTTTTTCATCTCCTGTAGCAACCTCCGCCAGGTAACGGTAGTAGTCTCCCTTCATCTTCAGGTAGAACACCTGGCTCTCTGCTGGAGACGTGCTGCGGATCAGGAACTTATCCAGGAGATTCAGCACGTCTTTGCAAATGGACTGTAGCTCTGCCTCAATTTTCTCACGATACTCTTTAGCCATCTGCTGCTTGTCGCTGCCCTCTGTCTTCTGCTCGATGCTAGAGATGACCCTCCAGGATGACCGGCGGGCGCCCACCACGTTCTTGTAGGCAACAGAGAGCAGGTTCCTCTCCTCGTCTGTCAGCTCCTCTCCCAGCTCCGTCACAGCCTTCATAGAGGCGGCCATGTCATCGTAGCGCTCAGCCTGCTCTGCAAGCTTGGCCTTCTGCACGTGCTGACTCTTATCCATCACTGCTCAGTTCCTAAACAAGAACCATAAAGAGTGAGGAGAGTGCATCTCAGAACAATCTGA
>TU267311
gcacacacacacacacacacacacacatacacacacacacacacacatatatatatttctttttttctgctttgtacatatttaatacTGGGCCAAACTCACCAGCACGTCTTTGCAAATGGACTGTAGCTCTGCCTCAATTTTCTCACGATACTCTTTAGCCATCTGCTGCTTGTCGCTGCCCTCTGTCTTCTGCTCGATGCTAGAGATGACCCTCCAGGATGACCGGCGGGCGCCCACCACGTTCTTGTAGGCAACAGAGAGCAGGTTCCTCTCCTCGTCTGTCAGCTCCTCTCCCAGCTCCGTCACAGCCTTCATAGAGGCGGCCATGTCATCGTAGCGCTCAGCCTGCTCTGCAAGCTTGGCCTTCTGCACGTGCTGACTCTTATCCATCACTGCTCAGTTCCCGAGAAAGGCAAAGGCGAAGCCGAAAGACGTCCTTATTCCGAAGGCAGAGCGGAAGACGAGACGAAATCGCTCAACAGTTTGCCGACCTCGTAACCAGGGCGTGTATCCGTGCAGCCTTCCCTGCTTCCCAGCTGACAGTCACCAAGAGCTCATCGGTGCACGGGGTTTCCCGCTCACTTTCCACTGCGGGCAGCAGGGGCTACAGTGGGAGGGCGTTGCTCTCTTTCCCGCC

Function

symbol description
ywhaz Predicted to enable monooxygenase activity. Is expressed in several structures, including EVL; epidermis; nervous system; periderm; and tail bud. Orthologous to human YWHAB (tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein beta) and YWHAZ (tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta).

NR:

description
14-3-3 protein beta/alpha-A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267310 True 1562 lncRNA 0.48 7 11663050 11678105
TU267311 False 640 lncRNA 0.54 4 11663803 11684544

Neighbor

gene id symbol gene type direction distance location
LOC103022883 LOC108438857 coding upstream 85141 11556072 ~ 11577909 (+)
adck5 adck5 coding upstream 180659 11450126 ~ 11482391 (+)
lix1l lix1l,LOC107670024,LOC107729891,LOC107693252,LOC107716589 coding upstream 215573 11434179 ~ 11447477 (+)
prcc prcc coding upstream 236391 11419729 ~ 11426659 (+)
mindy1 fam63a,LOC106569905,LOC106588341 coding upstream 287045 11360987 ~ 11376005 (+)
psmg2 psmg2 coding downstream 128681 11813225 ~ 11821844 (+)
seh1l seh1l,LOC107668717,LOC107746927 coding downstream 167467 11852011 ~ 11862695 (+)
ldlrad4 ldlrad4,ldlrad4a,LOC107675658,LOC107668709,LOC107566561 coding downstream 189397 11873941 ~ 11991483 (+)
rnmt rnmt coding downstream 320282 12004826 ~ 12019861 (+)
LOC103026238 LOC108410890 coding downstream 850887 12535431 ~ 12615182 (+)
G196939 LOC107738317 non-coding upstream 10175 11626382 ~ 11652875 (+)
G196940 NA non-coding upstream 87769 11574031 ~ 11575281 (+)
G196926 cpsf1,LOC107550069 non-coding upstream 146477 11510690 ~ 11516573 (+)
G196923 NA non-coding upstream 162369 11493577 ~ 11500681 (+)
G196918 NA non-coding upstream 175950 11486817 ~ 11487100 (+)
G196955 NA non-coding downstream 15054 11699598 ~ 11701681 (+)
G196965 NA non-coding downstream 64574 11749118 ~ 11750503 (+)
G196964 NA non-coding downstream 66197 11750741 ~ 11751715 (+)
G196974 ptpn2,LOC108438851,LOC107672871,LOC107738314,LOC107748370,LOC107552315 non-coding downstream 138659 11823203 ~ 11850741 (+)
G196981 NA non-coding downstream 189418 11873962 ~ 11929251 (+)
polr2k NA other upstream 108467 11551660 ~ 11554583 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other upstream 245347 11402155 ~ 11417703 (+)
samd14 samd14 other upstream 631781 11011041 ~ 11031269 (+)
G196633 NA other upstream 1170949 10491546 ~ 10492101 (+)
dpm3 dpm3,LOC107678800,LOC107693280,LOC107750811 other upstream 1601951 10058139 ~ 10061099 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other downstream 2855 11687399 ~ 11746235 (+)
G197106 NA other downstream 1030824 12715368 ~ 12774496 (+)
LOC103029421 NA other downstream 1204814 12889358 ~ 12928527 (+)
s100a14 s100a14,LOC108442988 other downstream 1272126 12956670 ~ 12964349 (+)
G197334 LOC108441809 other downstream 1639842 13324386 ~ 13362658 (+)

Expression


Co-expression Network