G196965


Basic Information

Item Value
gene id G196965
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 11749118 ~ 11750503 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU267326
AGAGACACAAAGCACAGGTTACCatacaaaaactacaaaatgaTGAAGACAAACATTTTGtttgattattaataatcataCAGTATAAATCCATAAAATACTGGCTTTTCTTCATACATGATTTCAATATTTGGCACTTGACCACTTTGTTGCTATTGTGCACAATTCGGAAGTGAAATTCTGGACAATagaattgaaatatttttatatatttaaagcattgtgacatttcagacctctggaacTTTCTTTACCTATTTAGGTGGTCCCAAAAGGTGCgattgtgcatttgcacattacACTTCTTTTGTAAAAGGGgggaataaattaaattacatcaaTGTTAGCATTAGCGATTTAGCATTCACTTCCTCTTTGTATAGAGCACAGTCTCTGCTAGCCCTGAGCGTGttactgtacatacatacagtcaCAATGACAATGCCTTCAGTTATTGTTCACACCCTCTCACCATCGCAGATTCTGACATATGCACAGACAAACACGAGTAAAACGAGACGTACTCAACAAACACTGTGCatgcactctcacacacacacaaaatgcacatacacacaaccaGACACATAAGGAGTCAGAAATagcttaaaataaacacaagatCAGGTTCATGTGTGCAAAAAAGCTGCGGTTGTGTGAGTTTCAAGAAAGCAAGCCAGAATAAATTCAGTCAGATTAAAAATTAACGACGGGTATTATTGCTGTTTAGATTCAACAGCTTGTTTTTTCAGAAGAGTGGAACAGAAGAGTGGCGGTAAACATTCACAGCATCTGACACACGATTCATGTACAAGATTTagccacactcacacactatttacactatacacactcagaGTCTTATAGTTTGATACTGTGTTTAGATCACGGGTTGCATGTGTGTGACAGTAGCAGTACAGGACAGTGGGGGAAGATCAGTTTGTGTCATTCAAGTCATGTTTGGTGTCTGAAGTTTAATTCTCTAGTTTTACACTGGAGTAATGAGGCTACTGTAGCAGATTTCCCAAATCCCCTGGAAGTGGcgggagtctaccgcatatcaacAACAGAtccctgatgcccgcaagtCAAATAAAATCTCCCGGAATCTATAACGAGTggcccaagagtgaacacaaacgtgcacacaggcgacagactttcTCCCCAACTGCGTGTGGGAAAAAGACGCTTTCCTCGTTTGCATATTCATAGGGTGCATGCAAAACAAAGAGAGTTCTGATTGGCCtattctctgcaaagagtctgtgagtcagccaatcagtttttagtgtgggtggaCAATGTTTGTCTCCCTCTTGGATGGGATGCGTTCAGGAGTTTCATgactcccatcaaaactcatttcacctctgactactctaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267326 True 1386 lncRNA 0.40 1 11749118 11750503

Neighbor

gene id symbol gene type direction distance location
LOC111195553 NA coding upstream 66645 11678931 ~ 11682473 (+)
LOC103022883 LOC108438857 coding upstream 171209 11556072 ~ 11577909 (+)
adck5 adck5 coding upstream 266727 11450126 ~ 11482391 (+)
lix1l lix1l,LOC107670024,LOC107729891,LOC107693252,LOC107716589 coding upstream 301641 11434179 ~ 11447477 (+)
prcc prcc coding upstream 322459 11419729 ~ 11426659 (+)
psmg2 psmg2 coding downstream 62722 11813225 ~ 11821844 (+)
seh1l seh1l,LOC107668717,LOC107746927 coding downstream 101508 11852011 ~ 11862695 (+)
ldlrad4 ldlrad4,ldlrad4a,LOC107675658,LOC107668709,LOC107566561 coding downstream 123438 11873941 ~ 11991483 (+)
rnmt rnmt coding downstream 254323 12004826 ~ 12019861 (+)
LOC103026238 LOC108410890 coding downstream 784928 12535431 ~ 12615182 (+)
G196955 NA non-coding upstream 47437 11699598 ~ 11701681 (+)
G196956 ywhaz,LOC107672854,LOC107698656,LOC107550094,LOC107738323 non-coding upstream 64574 11663050 ~ 11684544 (+)
G196939 LOC107738317 non-coding upstream 96243 11626382 ~ 11652875 (+)
G196940 NA non-coding upstream 173837 11574031 ~ 11575281 (+)
G196926 cpsf1,LOC107550069 non-coding upstream 232545 11510690 ~ 11516573 (+)
G196964 NA non-coding downstream 238 11750741 ~ 11751715 (+)
G196974 ptpn2,LOC108438851,LOC107672871,LOC107738314,LOC107748370,LOC107552315 non-coding downstream 72700 11823203 ~ 11850741 (+)
G196981 NA non-coding downstream 123459 11873962 ~ 11929251 (+)
LOC111195509 NA non-coding downstream 177333 11927836 ~ 11929113 (+)
G196984 NA non-coding downstream 188876 11939379 ~ 11959950 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other upstream 2883 11687399 ~ 11746235 (+)
polr2k NA other upstream 194535 11551660 ~ 11554583 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other upstream 331415 11402155 ~ 11417703 (+)
samd14 samd14 other upstream 717849 11011041 ~ 11031269 (+)
G196633 NA other upstream 1257017 10491546 ~ 10492101 (+)
G197106 NA other downstream 964865 12715368 ~ 12774496 (+)
LOC103029421 NA other downstream 1138855 12889358 ~ 12928527 (+)
s100a14 s100a14,LOC108442988 other downstream 1206167 12956670 ~ 12964349 (+)
G197334 LOC108441809 other downstream 1573883 13324386 ~ 13362658 (+)
rpa3 NA other downstream 2526288 14276791 ~ 14293068 (+)

Expression


Co-expression Network