G196981


Basic Information

Item Value
gene id G196981
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 11873962 ~ 11929251 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU267348
AGAGACCGTCTAGACATCCTTCACCCCCCCTCCGGGCAGGGAGCACCGTCTGGAGGCGAGACTTCTCGGTCAAAGAAGCTGATTTGTCCTGAAGTAAAGCTCACGTGTTGCTGAGGAGGGAATGGTGTCGCTGGCAGATCGATCAGGAACGTTTCTTTTGGACACCGAGCAGGGCAAGGCCTGAGACCAGCTAGCGGAAAAGTCTCCAGCAGCTCCTCTGACCTCTCGTGTTGTAGGCCATGGCAGATCACCCGTGGCTGGAGGTTAGAAAAACCCTGCGTGTTTGTTTCTCTGCTGAAAGAATCTAGCGCAGTGCTCCTCTGTTCTGTAGGCCGGCCTGCTCTGGTTGGGCTCTGCAAGCTGAGGCTAAAATCAAGACTTTAAAAAGGTGGAACCTGAAATGGAGGACATCCAGACGCACTGTCTGACCCCTAGGCCTCTCTGCTGGACCGGTTGAAGCTGCTTTGCAGAAGTGTTCCTGCAGCAGCAGTATGCAGACAGATGATTATCCAGCCACAAACACTTTTACAGAGTGCAGGTTTCAGTGCAGTAATGGTAAATGTCTGCACCTGGTGTCTCTGATCTGTAACCAGCTGAATGACTGTGGAGATCTGAGTGATGAACAGAGCTGCTCTACAGTCAGCCTTCAGCCCCCACTGAACCAGCCCACCTTACACAgttgaaaagaagatggagaagtTTCAGCTTGCAGCTATGGAGAGTTCACCACGAAAGAACGAAGTCAAAGAATACAAAGATCTGTCCATATTCTGAAGTCACCACTTGAAGAttttatgcagaattatttggattatgaataggaaccacattatttgcaacagcttttattatttatacaaacaagATGAACATGATATGATGTGCCAGAATATAGGGAGGCTgcctaaaacatacaaaaaaaaaatacagaacacatgtaaacaactaaagaaaaacagaacatatataaaatcaataaataaatcaaataaacacagcacagactgcatgaaattggatttctttatttgttctttaaaagtttggagaaaggaaacctgtG

Function

GO: NA

KEGG:

id description
ko04512 ECM-receptor interaction

RNA

RNA id representative length rna type GC content exon number start site end site
TU267348 True 1063 lncRNA 0.45 4 11873962 11929251

Neighbor

gene id symbol gene type direction distance location
seh1l seh1l,LOC107668717,LOC107746927 coding upstream 11267 11852011 ~ 11862695 (+)
psmg2 psmg2 coding upstream 52118 11813225 ~ 11821844 (+)
LOC111195553 NA coding upstream 191489 11678931 ~ 11682473 (+)
LOC103022883 LOC108438857 coding upstream 296053 11556072 ~ 11577909 (+)
adck5 adck5 coding upstream 391571 11450126 ~ 11482391 (+)
rnmt rnmt coding downstream 75575 12004826 ~ 12019861 (+)
LOC103026238 LOC108410890 coding downstream 606180 12535431 ~ 12615182 (+)
LOC103026839 txnip,txnipa,LOC108410889,LOC107672857,LOC107738596,LOC107702541,LOC107731569 coding downstream 774603 12703854 ~ 12708168 (+)
LOC111195554 NA coding downstream 854927 12784178 ~ 12788778 (+)
LOC107197759 NA coding downstream 963968 12893219 ~ 12896452 (+)
G196974 ptpn2,LOC108438851,LOC107672871,LOC107738314,LOC107748370,LOC107552315 non-coding upstream 23221 11823203 ~ 11850741 (+)
G196964 NA non-coding upstream 122247 11750741 ~ 11751715 (+)
G196965 NA non-coding upstream 123459 11749118 ~ 11750503 (+)
G196955 NA non-coding upstream 172281 11699598 ~ 11701681 (+)
G196956 ywhaz,LOC107672854,LOC107698656,LOC107550094,LOC107738323 non-coding upstream 189418 11663050 ~ 11684544 (+)
G196984 NA non-coding downstream 10128 11939379 ~ 11959950 (+)
G196986 NA non-coding downstream 63931 11993182 ~ 11994321 (+)
G197090 NA non-coding downstream 692758 12622009 ~ 12624605 (+)
G197097 NA non-coding downstream 711527 12640778 ~ 12641014 (+)
G197099 mtx1b,mtx1,LOC103026555,LOC108410892,LOC108272909,LOC105901471 non-coding downstream 732800 12662051 ~ 12693905 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other upstream 127727 11687399 ~ 11746235 (+)
polr2k NA other upstream 319379 11551660 ~ 11554583 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other upstream 456259 11402155 ~ 11417703 (+)
samd14 samd14 other upstream 842693 11011041 ~ 11031269 (+)
G196633 NA other upstream 1381861 10491546 ~ 10492101 (+)
G197106 NA other downstream 786117 12715368 ~ 12774496 (+)
LOC103029421 NA other downstream 960107 12889358 ~ 12928527 (+)
s100a14 s100a14,LOC108442988 other downstream 1027419 12956670 ~ 12964349 (+)
G197334 LOC108441809 other downstream 1395135 13324386 ~ 13362658 (+)
rpa3 NA other downstream 2347540 14276791 ~ 14293068 (+)

Expression


Co-expression Network