Gene
RNA
| Item | Value |
|---|---|
| gene id | G64126 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000010 |
| NCBI id | null |
| chromosome length | 12265998 |
| location | 3929616 ~ 3931626 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU73023 | True | 1424 | lncRNA | 0.37 | 4 | 3929616 | 3931626 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000010_03914320_03915250 | LRRIQ3 | coding | downstream | 14366 | 3914252 ~ 3915250 (-) |
| CI01000010_03912179_03913373 | NA | coding | downstream | 16243 | 3911683 ~ 3913373 (-) |
| CI01000010_03890095_03899058 | SSBP3B, SSBP3, SSBP2 | coding | downstream | 30558 | 3890069 ~ 3899058 (-) |
| CI01000010_03787388_03880750 | NA | coding | downstream | 48866 | 3787388 ~ 3880750 (-) |
| CI01000010_03617450_03619486 | NA | coding | downstream | 310130 | 3617343 ~ 3619486 (-) |
| CI01000010_03941555_03947042 | NA | coding | upstream | 9929 | 3941555 ~ 3947042 (-) |
| CI01000010_03961520_03974921 | SLC44A5B, SLC44A5, SLC44A5A | coding | upstream | 29793 | 3961419 ~ 3974921 (-) |
| CI01000010_03992093_03992619 | NA | coding | upstream | 59475 | 3991101 ~ 3993606 (-) |
| CI01000010_04028461_04031710 | NA | coding | upstream | 96671 | 4028297 ~ 4031710 (-) |
| CI01000010_04153653_04157398 | NA | coding | upstream | 220254 | 4151880 ~ 4158138 (-) |
| G64119 | NA | non-coding | downstream | 9726 | 3919670 ~ 3919890 (-) |
| G62699 | NA | non-coding | downstream | 297612 | 3631538 ~ 3632004 (-) |
| G62682 | NA | non-coding | downstream | 330581 | 3598826 ~ 3599035 (-) |
| G62650 | NA | non-coding | downstream | 491036 | 3438346 ~ 3438580 (-) |
| G62648 | NA | non-coding | downstream | 492688 | 3436698 ~ 3436928 (-) |
| G64168 | NA | non-coding | upstream | 122911 | 4054537 ~ 4055332 (-) |
| G64169 | NA | non-coding | upstream | 125591 | 4057217 ~ 4059152 (-) |
| G64332 | NA | non-coding | upstream | 286127 | 4217753 ~ 4220928 (-) |
| G64237 | NA | non-coding | upstream | 299567 | 4229950 ~ 4236416 (-) |
| CI01000010_03527436_03530341 | NA | other | downstream | 397964 | 3527408 ~ 3530359 (-) |
| G61965 | NA | other | downstream | 2384565 | 1424425 ~ 1545051 (-) |
| G61888 | NA | other | downstream | 2683598 | 1244469 ~ 1246018 (-) |
| G61045 | NA | other | downstream | 3354105 | 572753 ~ 575511 (-) |
| CI01000010_04612793_04613017 | SMIM15 | other | upstream | 680870 | 4612460 ~ 4613135 (-) |
| G64564 | NA | other | upstream | 1117529 | 5049155 ~ 5242926 (-) |
| G64877 | NA | other | upstream | 1984631 | 5916257 ~ 5917011 (-) |
| G64918 | NA | other | upstream | 2162063 | 6093689 ~ 6096480 (-) |
