G197090


Basic Information

Item Value
gene id G197090
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 12622009 ~ 12624605 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU267511
tggatttgtttttgtttgcttgtttatttcatttttttttcattattttcaatACTGTTCCAGACTGAACAAACAGTGGTTTGTAAACCACAAagcacacatttatatttaaaaccgTACATTCACAGACAAACACAATTCAATTTTATGGTTCCCTTCATATTAACTATAATTATTGTAGACtgcatgtccaaatgtttgtataCACCCCTTCTAAACATGTATTCAGGTCATTTAAGACATAAAACAGCTTTTCTAGTGTAGTGGAGCAGTGGTACTGTCTTCTCTTCAATTATGGTgcttcatccaatacttttgggatgagttgatgaGTTAGGGAGTCATTGACGAGGTGTTGGtgttgatcatccaacATTTTTGGACAGTATAGACAGTtataaaaaaacccaaaaaaagaacagaaaacactCTTTCATATaccattgatttaaaaaaacaaaaacagtgaataaacatgtgtcccaatacttttgtctattgTTGACCAAAACCTGTactaattacattatatattttatgtatagaaaaaaaaatctacacacattaacatacacactcactagCTACATTTAGCACCATAGACATGTCCAAGTATTGGTATCTGTGCATTTcaaacaataaaagcatttatttattgtttatttttcattttatgcaGTAATCTGTAGTGCTGAAAAGtatgattttctgttttttattgctttttgtcCATCAGCATTTTCTGACTGCAATATCCGACATGGATTATGCAAAGACTTCATACGACCATTGGGAATTTGCCCAGAGATAAACAAATCCTGACTGCTAGCGTAGCATGTAGCATGTAGCAGCTAATAAATACTGATATTAGATTTTTTAGCAGTAAAGTTAGCTATCTATTCTTCTGCATTTACCAGCTAGCAAAACAAATCAATCAGCCACatctcaagctttttttttaatatccacCTTCTTGTCAAGATACATCAACATAAATGGGGGAAGtctttaaactaaaaaatctctttttaaagGCAAATTAAGCATTACTGGAAGAAGAGAGTATCCCAATGTGAGAATAGATGTAgcacattttttctttaaagtaatCATGTTCATTGAActgataatacatttataaagtgttttaaactgaagtATTGTATTATACAGCAATCACCAACATGGATATAATGCCATTCTTATTGTGTGAATTATCTATCAAAAAGCTATGTAaccattaaaaaatgaataagaaaaaaacatatttacaaacaCATGTGGACACCAGAGTGCACAATACAGCCATAATACAACAATGCCATTGTAAAGCTACATATTGTGACTGTGACTAAGGTGGCCTTtactaaatatgaaataataatccaaaataaGTTGGACTCTAACtttagtttagagtttagttcTTTAGTCGATACAGTACTTTGATTCACCAAAACAGAAAACCTCATCTGTTCATTCAGGAAACTTACAGCACTGTGATCTGTGATTGGTTAAAGGGTTGATTAGCTTATTACTATATTTTGTGAACATCACAAAGTACTGCAAGGGATTAATAATACGAGAACAACAAACAGTACTGTGCAGCTCTAGTAAATTCTAGCATTGATTCTCTGaaacagaacaaacaaacaacacacattCATGCTTACACAACACACTCTCAAACTCCTACAAAATaactcacacatgcacacaagcacacacacaaagtctACAAAGAGTGGTTTTAAGCACTGATGGCTACTGGTGTGAAGCCTAGTCTCACATTCATGTCTTGATTCAGTTgcctaaagccctatccagatgggattaggtcctctgtgattttattcctgtccagaacgaccatgtatgtgtttttcttaggcattctctgaaaaaattacaggctgaattatctactgtttttcactgaactctgtggtcctccggtaattttttTTCCGTCCGGATGCAtaatctctgagtttcgtcacctcacgtttaataaaatagctgtttGTCCACTGCATGggcatgtaaacacaacagggagtggaaatggaggagctactgaatgtgatgtcatgtgactgagaaagccaaaacactcactggtcctcctgttttttcagttgcagtccagatgcaagagttttatcactgagtagaagtgtgaaatatttttcacagacgtccccctaaagaaactaatcctgtcctgATATTTTGCTTGTATCAATTCTAACCTTAGTTGGCTTCTTGATTAAATTGTTCATATAGTTAATTTAGGCACACACATATCAGGTTCCTCCCAGAAGATGTTGCTATACAGTTCtcagaaaaattaagagaccactttagtttctaaatcagtttctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267511 True 2385 lncRNA 0.34 3 12622009 12624605

Neighbor

gene id symbol gene type direction distance location
LOC103026238 LOC108410890 coding upstream 6827 12535431 ~ 12615182 (+)
rnmt rnmt coding upstream 602148 12004826 ~ 12019861 (+)
ldlrad4 ldlrad4,ldlrad4a,LOC107675658,LOC107668709,LOC107566561 coding upstream 630526 11873941 ~ 11991483 (+)
seh1l seh1l,LOC107668717,LOC107746927 coding upstream 759314 11852011 ~ 11862695 (+)
psmg2 psmg2 coding upstream 800165 11813225 ~ 11821844 (+)
LOC103026839 txnip,txnipa,LOC108410889,LOC107672857,LOC107738596,LOC107702541,LOC107731569 coding downstream 79249 12703854 ~ 12708168 (+)
LOC111195554 NA coding downstream 159573 12784178 ~ 12788778 (+)
LOC107197759 NA coding downstream 268614 12893219 ~ 12896452 (+)
LOC103028905 NA coding downstream 274122 12898727 ~ 12904626 (+)
LOC103030274 NA coding downstream 372984 12997589 ~ 12999507 (+)
G196986 NA non-coding upstream 627688 11993182 ~ 11994321 (+)
G196984 NA non-coding upstream 662059 11939379 ~ 11959950 (+)
G196981 NA non-coding upstream 692758 11873962 ~ 11929251 (+)
LOC111195509 NA non-coding upstream 692896 11927836 ~ 11929113 (+)
G196974 ptpn2,LOC108438851,LOC107672871,LOC107738314,LOC107748370,LOC107552315 non-coding upstream 771268 11823203 ~ 11850741 (+)
G197097 NA non-coding downstream 16173 12640778 ~ 12641014 (+)
G197099 mtx1b,mtx1,LOC103026555,LOC108410892,LOC108272909,LOC105901471 non-coding downstream 37446 12662051 ~ 12693905 (+)
G197174 NA non-coding downstream 260597 12885202 ~ 12885485 (+)
G197175 NA non-coding downstream 261018 12885623 ~ 12886011 (+)
G197188 NA non-coding downstream 304464 12929069 ~ 12929331 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other upstream 875774 11687399 ~ 11746235 (+)
polr2k NA other upstream 1067426 11551660 ~ 11554583 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other upstream 1204306 11402155 ~ 11417703 (+)
samd14 samd14 other upstream 1590740 11011041 ~ 11031269 (+)
G196633 NA other upstream 2129908 10491546 ~ 10492101 (+)
G197106 NA other downstream 90763 12715368 ~ 12774496 (+)
LOC103029421 NA other downstream 264753 12889358 ~ 12928527 (+)
s100a14 s100a14,LOC108442988 other downstream 332065 12956670 ~ 12964349 (+)
G197334 LOC108441809 other downstream 699781 13324386 ~ 13362658 (+)
rpa3 NA other downstream 1652186 14276791 ~ 14293068 (+)

Expression


Co-expression Network