G197106


Basic Information

Item Value
gene id G197106
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 12715368 ~ 12774496 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU267531
gtcaagctcagTCTAGTTGAGTCTTGGTCAGAGAGTCTCACACAGACAGTAACAGACAGACAAGTCACATGGACTAGTCAGGCGGACACAGAGGGAGCAACGACCAACTAAGCTGTGCCCgtgtagattttctgtctgcacgagaataaactcaagtcatctctcaagctgtctcctgattcctgattctgactcctgattcctgaaagccgaATTTCTAACAACTTGGTGCCGTTGACCGGATGGCCTACTGAAACCTACTTGGTGAGTAAACGCCATTTCGAACTGAAGAGAAATTATGGCTGGATAAAATAGGAGTCAGTAaatgttatcctctctgaactgagagatgcttgtttgttactgctagaagatcagaattagtaactgttatcctctctgaactgagagatgttttgtttgttactgctagaagatcagaattagtaactgttatcctctctgaactgagagatgcttgtttgttactgctagaagatcagaattagtaactgttatcctctctgaactgagagatgttttgtttgttactgctagaagatcagaattagtaactgttatcctctctgaactgagagatgttttgttttgttacaacTGTAAATTTAGGATTTGTTACTGGGATCTGCCGGTAGTGTctttgttttgctattgtttCAGAAAGCTTGGTtttgttctcttgttttctcaccATGTCTGCTAAAGGCCAAAGCATTCAGAATCTTGCTAAACCTCTTAACTATAAAAACAGCACCTTAGTTAAGGGAGGGACTGAAATGCCACAATGgtctgattctgattttgaAAGCGTAATCAGTGACATTGGGAAGAAACATATTTGTGAGCAAAAGTTAACTCAGTACTTTTCATCCAAAGGTTTCTCTGCTGATAGAGAATGGACTCTTGCTGAGTGTAAAACAGCTTTAGGTTACAGCCTCAAGCACAACTCAGTTAAGGAATGTCTTTTTGTTATTAAGCATTACTGGGAATGCAAGTTGAAATCTATGGATGAAAAGTTAAAAGAAGCAGAAGGAAAGGTCTTAGAGCTAACTAGCGAGTGCAGAAGGCATAAAACTGCTACCAAAACATGCCCAGAGCACATGCAAGCAACTGCAGCAAACATTGACAGAAGTTGAACAGCAACATGCCAAACTTAAGTCAAAGTCAGGGCCTCAGTGTTCTCTGACTGTTGCCCCTACTCCAGGTCAGCCGTGTTACAAAGAGGATGGAAATCCTCAAGTAGCAGTCAGGCTGTATCCTGAATTGTCTGAGAGTGACCTCTCTGATGGGTCAGAATCTGTGTCATCAGATAAAGATTCTGACCATGCTACTGGTAAAACACACTTTCCAATCTGTGTTAAAATGAGACCTGTAAACTGTTTGTATCCTCTGAGTACTTAATAGGAGAAATGCAGGTGGTGAAACCAGACTAGAAATTGGGCACATTCCTTTAGATGCAGCAACTTTGGACACAATATCCAAAGAGTTTAAACCTCCGAGGGAAATGGGGCTCGACTTCATTGACCTCATGCATAAGAAAAGGAATCTGTACTCATTACATCCCAATGATGCAGTAAGCAATTGCTAGCCAAGTTCTTAACATCACAGATGGTAGAGAACTTGCTAAAAAGGTGTTGAATGCTTTGGGTGGCAAAGGCCAGAACCTTGACAAAGGCTGGGAAGCTTTTGATGACTGGATTAAATGCAAATACCGTAAAACCACTGATTGGGGGCAGATTACCAACTGCAGACATAGAAAGGGAGAGTCTGCAGCAGACTTCTGTGAGAGGTTTGAAAGAGTTTTTCTGCGTCATTCAGGTATCAGCCAATACAATGCTGATAACATTAACAATACAACCGATGGTCCCCATTTTAGACAGCTGGTTGAGTCACTACAAACAGATCTTAGACGAGCTCTGGTGACTGCTGTTCCAAACTGGAGAAAAACAAAGTGGGTTGATCTTAAGAATGAACTGGACCGTTTGGATGTGGATCTTGAACCAAACCATGTTCCTGCATCCATACACATCCTCACAAAGAATGGATCAAACTTGGGTCCAACTCAAACATTCACTAATCAGAAAAAAGAGTGCCACTACTGCCATAGAATTGGTCACTTTTCTCGAGTTTGTCGTAAAAAGCAGGCAGATAGACGCAAAATGGGTGCTAGTTCTAGAGGCAACACAATGGAAAATTCTTTTGGTGGGTTCTCACAGGGAAGCCCAGCTGGGATTTCACAAGAACAGATACCACTGATAATCAAGACTTTACAGGGTGTCACAGAGCAGTTATCTTTGATATTCAGTGCTCTACAGGGAGTCACAGGGATTTCAACAGTTTCTCCTGCTTTGGCTTAAGCTAATTTGTCCTGCTACTTAAACTCttatttgtgctttttgtttttaagaactGGATTTTGATGGTTTCAAATCTCAGAGCAGAATTTTAAGTTTTCTTATGAACATAAGCTAAATTTACCATCCAGGTTGAGCTTACCATAAGCTTAGTAGCATCAATAATATCTTATTGAGATTTGAGTGCACTTTTCgaacagttttattttgttttgttttcatactAGCAAGGGACTTGAGGCCAGTCCTGATTAAGTTATGTTGTGTTGCACAATTTTTTAGATAATGCACCAAACAAAGTTTTTGCAGACTTTTAGGTGATGTAGTTATTGCATTTAGATCAAATTAACCACTATACGATCAATTTAAAATTGTTATACACTGAATAAACCACTATACGATCAATTATATGATTCAAGTTTTATATTCTTTCCAGCTACAACCTGTAGTTTGAGTTCCTGATCTGTGGAACTCTGAGTATGGCTGAACTGATATGTTGAAAGTGATCCAGATGGTTTCTGGATCAAAGGGGAAGCTAACACTAGCTTTAAAAGCACAATTTGGTCACAGTAGGGTAAACTTCCGACAACTAACGGGATTAGAGCAAATGTCTTGTTATTTCTGGTCAATGGCTCATGgtgaggaaacatgaaacaatcTATTTAGATGAGAATGTCTCATTAGGTTTTGTTAGTTTCTGCTTGCTCCCCAAAACTGAGATCTAGGGTCAGTAAAAGAAGAGGTGGGTAATAGTACAGAGTCCCGAGGAAGAACCATGATTTCTATTTTCATGGGGGTTACCCTTTGGGATGAAGATTTCAACACACTGTACATTATCATAGCAGCCTCTTCTGAGGGACAGACAGTGGGGATAAGCagataaactacaaaaaaagacataatCAACATCAATGAACAATTTACTGCTCAGTGTTTCCTCTGTTACAGATCTGTTGGAGCCAGACAGTGCTCCAGCCAATCCAGCATGGCGAGAACAATTTGTGACGTGTCGGACGCAAGCCTCAACAGTTGAAGAGACAACTGATGTTCAAAGTGGACTTCCCAGATTACTTGCCTTTCACCGACGTTGAAGCACACGCCATGGAcatccacacgcacacacacacacacacacaatgtggcTGCTCACAAGTTAAAGTGGCGATGTAAGAGGAGACATCACCACATGGAAGCAAGCCTATTGGACAACCACAGACAACTACTGGAACTACTTTCTTCATTGTTCTTCAGGAACATTTTTAGGACCAAGTAACAGCCCATAAACAGATCCAATACTTGGTTACATCAACTTTTCTGACATTTATGGTACAATTACAGTTGTATAGTTACAGCTCTTTAATTGTTTATACATATGACAATTTATTGTACATAGTTTTGTGATTCTCCATGTTGGGAGAATCAGAGGGAGCAATGAGAGATTCTGTCAACaacaaattgtacttttattaagttttcttAGGTTCTAAACTGTCTCACTCCTTAACCCCCCTTTTTCCCTATACACTCCTAACCTTTTGCCCCTCACCCTTATCTCTCACATCTCTCCTTTGTTTAACATATGTTGATAGAGACACCCAATGATGACACCCCCCACATACTCCTCCATAAACCCTTACCCTTTCTCCCCCTGCTGTGTTCAAAGCAGTTTCTCCTGTATGTAAAGTCCTGCTAAAATGTCTTAGTAGCTCAGTCTAGTTGAGTCTTGGTCAGAGAGTCTCACACAGACAGTAACAGACAGACAAGTCACATGGACTAGTCAGGCGGACACAGAGGGAGCAACGACCAACTAAGCTGTGCCCgtgtagattttctgtctgcacgagaataaactcaagtcatctctcaagctgtctcctgattcctgattctgactcctgattcctgaaagccgaATTTCTAACAGTC
>TU267533
CCTGAGAGATTCTGTCAACaacaaattgtacttttattaagttttcttAGGTTCTAAACTGTCTCACTCCTTAACCCCCCTTTTTCCCTATACACTCCTAACCTTTTGCCCCTCACCCTTATCTCTCACATCTCTCCTTTGTTTAACATATGTTGATAGAGACACCCAATGATGACACCCCCCACATACTCCTCCATAAACCCTTACCCTTTCTCCCCCTGCTGTGTTCAAAGCAGTTTCTCCTGTATGTAAAGTCCTGCTAAAATGTCTTAGTAGCTCAGTCTAGTTGAGTCTTGGTCAGAGAGTCTCACACAGACAGTAACAGACAGACAAGTCACATGGACTAGTCAGGCGGACACAGAGGGAGCAACGACCAACTAAGCTGTGCCCgtgtagattttctgtctgcacgagaataaactcaagtcatctctcaagctgtctcctgattcctgattctgactcctgattcctgaaagccgaATTTCTAACAGTC
>TU267535
CCTGAGAGATTCTGTCAACaacaaattgtacttttattaagttttcttAGGTTCTAAACTGTCTCACTCCTTAACCCCCCTTTTTCCCTATACACTCCTAACCTTTTGCCCCTCACCCTTATCTCTCACATCTCTCCTTTGTTTAACATATGTTGATAGAGACACCCCCAATGATGACACCCCCCCACATACTCCTCCATAAACCCTTACCCTTTCTCCCCCTGCTGTGTTCAAAGCAGTTTCTCCTGTATGTAAAGTCCTGCTAAAATGTCTTAGTAGCTCAGTCTAGTTGAGTCTTGGTCAGAGAGTCTCACACAGACAGTAACAGACAGACAAGTCACATGGACTAGTCAGGCGGACACAGAGGGAGCAACGACCAACTAAGCTGTGCCCgtgtagattttctgtctgcacgagaataaactcaagtcatctctcaagctgtctcctgattcctgattctgactcctgattcctgattcctgaaagccgaATTTCTAACAGTC
>TU267537
gtcaagctcagTCTAGTTGAGTCTTGGTCAGAGAGTCTCACACAGACAGTAACAGACAGACAAGTCACATGGACTAGTCAGGCGGACACAGAGGGAGCAACGACCAACTAAGCTGTGCCCgtgtagattttctgtctgcacgagaataaactcaagtcatctctcaagctgtctcctgattcctgattctgactcctgattcctgattcctgaaagccgaATTTCTAACAGTC

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0009790 embryo development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267531 True 4301 TUCP 0.41 2 12715368 12774496
TU267533 False 496 lncRNA 0.44 2 12769923 12774496
TU267535 False 506 lncRNA 0.44 2 12769923 12774496
TU267537 False 233 lncRNA 0.47 3 12715368 12774496

Neighbor

gene id symbol gene type direction distance location
LOC103026839 txnip,txnipa,LOC108410889,LOC107672857,LOC107738596,LOC107702541,LOC107731569 coding upstream 7200 12703854 ~ 12708168 (+)
LOC103026238 LOC108410890 coding upstream 100186 12535431 ~ 12615182 (+)
rnmt rnmt coding upstream 695507 12004826 ~ 12019861 (+)
ldlrad4 ldlrad4,ldlrad4a,LOC107675658,LOC107668709,LOC107566561 coding upstream 723885 11873941 ~ 11991483 (+)
seh1l seh1l,LOC107668717,LOC107746927 coding upstream 852673 11852011 ~ 11862695 (+)
LOC111195554 NA coding downstream 9682 12784178 ~ 12788778 (+)
LOC107197759 NA coding downstream 118723 12893219 ~ 12896452 (+)
LOC103028905 NA coding downstream 124231 12898727 ~ 12904626 (+)
LOC103030274 NA coding downstream 223093 12997589 ~ 12999507 (+)
LOC111195514 NA coding downstream 254412 13028908 ~ 13030890 (+)
G197099 mtx1b,mtx1,LOC103026555,LOC108410892,LOC108272909,LOC105901471 non-coding upstream 21463 12662051 ~ 12693905 (+)
G197097 NA non-coding upstream 74354 12640778 ~ 12641014 (+)
G197090 NA non-coding upstream 90763 12622009 ~ 12624605 (+)
G196986 NA non-coding upstream 721047 11993182 ~ 11994321 (+)
G196984 NA non-coding upstream 755418 11939379 ~ 11959950 (+)
G197174 NA non-coding downstream 110706 12885202 ~ 12885485 (+)
G197175 NA non-coding downstream 111127 12885623 ~ 12886011 (+)
G197188 NA non-coding downstream 154573 12929069 ~ 12929331 (+)
G197189 NA non-coding downstream 154913 12929409 ~ 12929695 (+)
G197190 NA non-coding downstream 156110 12930606 ~ 12930943 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other upstream 969133 11687399 ~ 11746235 (+)
polr2k NA other upstream 1160785 11551660 ~ 11554583 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other upstream 1297665 11402155 ~ 11417703 (+)
samd14 samd14 other upstream 1684099 11011041 ~ 11031269 (+)
G196633 NA other upstream 2223267 10491546 ~ 10492101 (+)
LOC103029421 NA other downstream 114862 12889358 ~ 12928527 (+)
s100a14 s100a14,LOC108442988 other downstream 182174 12956670 ~ 12964349 (+)
G197334 LOC108441809 other downstream 549890 13324386 ~ 13362658 (+)
rpa3 NA other downstream 1502295 14276791 ~ 14293068 (+)
tac1 tac1 other downstream 1691769 14466265 ~ 14468882 (+)

Expression


Co-expression Network