G197174


Basic Information

Item Value
gene id G197174
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 12885202 ~ 12885485 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU267626
CTCCACTGCATCCACCTCCAGCTCAAGGACTCTCTGAAACACACATGACAATATCAGAAGTAGACATGGAGCGGTCACTATTGTGAAGCACAATCATTATGATTACAATATAATAGAAAGAAATATGTATGATTTATACAATGTTGACAGTATGCATCAAGGGTGGGAATGTATAGGACGTACTTGCACATAGTTATATCGCAATTCTTTGACTCTTTCTGAATTGCGCTCAAATGGCACCCTGTAGACCTGCTTCATCCTCAGTTTATTTCTGTGCAAGACAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267626 True 284 lncRNA 0.40 1 12885202 12885485

Neighbor

gene id symbol gene type direction distance location
LOC111195554 NA coding upstream 96424 12784178 ~ 12788778 (+)
LOC103026839 txnip,txnipa,LOC108410889,LOC107672857,LOC107738596,LOC107702541,LOC107731569 coding upstream 177034 12703854 ~ 12708168 (+)
LOC103026238 LOC108410890 coding upstream 270020 12535431 ~ 12615182 (+)
rnmt rnmt coding upstream 865341 12004826 ~ 12019861 (+)
ldlrad4 ldlrad4,ldlrad4a,LOC107675658,LOC107668709,LOC107566561 coding upstream 893719 11873941 ~ 11991483 (+)
LOC107197759 NA coding downstream 7734 12893219 ~ 12896452 (+)
LOC103028905 NA coding downstream 13242 12898727 ~ 12904626 (+)
LOC103030274 NA coding downstream 112104 12997589 ~ 12999507 (+)
LOC111195514 NA coding downstream 143423 13028908 ~ 13030890 (+)
LOC111195511 NA coding downstream 155706 13041191 ~ 13043435 (+)
G197099 mtx1b,mtx1,LOC103026555,LOC108410892,LOC108272909,LOC105901471 non-coding upstream 191297 12662051 ~ 12693905 (+)
G197097 NA non-coding upstream 244188 12640778 ~ 12641014 (+)
G197090 NA non-coding upstream 260597 12622009 ~ 12624605 (+)
G196986 NA non-coding upstream 890881 11993182 ~ 11994321 (+)
G196984 NA non-coding upstream 925252 11939379 ~ 11959950 (+)
G197175 NA non-coding downstream 138 12885623 ~ 12886011 (+)
G197188 NA non-coding downstream 43584 12929069 ~ 12929331 (+)
G197189 NA non-coding downstream 43924 12929409 ~ 12929695 (+)
G197190 NA non-coding downstream 45121 12930606 ~ 12930943 (+)
G197197 NA non-coding downstream 52872 12938357 ~ 12938641 (+)
G197106 NA other upstream 110706 12715368 ~ 12774496 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other upstream 1138967 11687399 ~ 11746235 (+)
polr2k NA other upstream 1330619 11551660 ~ 11554583 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other upstream 1467499 11402155 ~ 11417703 (+)
samd14 samd14 other upstream 1853933 11011041 ~ 11031269 (+)
LOC103029421 NA other downstream 3873 12889358 ~ 12928527 (+)
s100a14 s100a14,LOC108442988 other downstream 71185 12956670 ~ 12964349 (+)
G197334 LOC108441809 other downstream 438901 13324386 ~ 13362658 (+)
rpa3 NA other downstream 1391306 14276791 ~ 14293068 (+)
tac1 tac1 other downstream 1580780 14466265 ~ 14468882 (+)

Expression


Co-expression Network