LOC103029421


Basic Information

Item Value
gene id LOC103029421
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 12889358 ~ 12928527 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU267630
CCTAAAGTGGATCATACCATTCCATGTTAATAAGCATTCCTCTTGTTTATCTGCCTGGTTGGTTATTGGTGGCGTCTAAGTTAAGCCTCACTCTCTTCTGTGCTGGATCAGTCCCCTGGTCTTCTTCATGTGTTTGTTGGAGATACATTTAAAGTGAAATGCCTCCATGAGCTGCCGGTTTCTTATTGCTATTCTACTACAGCGTGGCACAAAATGGATTTGAGGACTGGAAAACTGATCCAAAAACTATCCCAGGGACCTGAAACTGACCAGCCTGAAGATAATGGTAAAATCTGCAGCCTGACCATCTCTAAGGCGACCCTGCAGGACTCAGGCATGTATTACTGCACAGGTGTTCATAATTTAATTGCGTTAATCGGAAACGGCACCCGGGTCATCGTCACAGATCGTGCCCGTttcaatccatccatcatctTGTACTCTCCTTTGGACGTGTCCGGCCCCATCGTTCCCCTGCAGTGTTTGGTGATGGGAGCTGTCCCTCTCAGGTACAGGTCTCCTGGATCATTGACCAAACTGAGCGTGAAGGATGGACAGAGTCGAGCTGGACAGAAAACAGTGATTCGGCTCAGGAATACACTCGAGCTCAGATCACTCTTTCTGAGGAAGAGTGGAGGAAAGCTGATCTGATCGAGTGTTTCGTCGCATACGACGGCAAAAACACCTCTAAACGTCTGGAGAAACAGGTTGTAGGTGTGTGTACCTGGCCTCTGTACCTGGGCTTCGGGGTTGCATTCGTCACGGTCACTGTCACTGTCACTGTTGTCGTTTGTTTTTGCAGAGGGGCCTTGGGGGGAAGGTTCAGGACAAACAGAAGAATCATGgaaaacaaaacttacTGAAGCCCACCTCAGAGACCTGGACAgTTGTGGAATATTCCTGCTATAATCCAGACCACAGTGTGTTTGAACCTTTGATTAAAACTTAAGCTCTTTAATTTTCCAGCttagcaaaaaaatacaattatatatacTTACTTGTACTGACAAGTCTCTTTTTTAGTGTCTAAAAGAGAAACTGACTATAAACTAAAACTGTTGGAAGAAAAGAgatatttgaaataaaatgtaaatatgtgcCCGGACTCTTGCACCCCTCACTGTACTGAACACGTGATTCTCCCTCCCTAGCTCTTAATCACCTGATTTTGTAGATTCACCTGGTCCCCATAGTATATATACCTCCTGTTTTCCATAGTTCTTTGGAGAGTTTTATTTGGGTAATCTATTATTCATTGCAAagcattttccatttttgtgttttctctgtgtatGACCCCATGCCTGATTTTTgagtattgtattgtttttgttttacaatgtACCTACTTTAGACTGTTTAACTAACCCAATAATTTgctgatttttgtatttttgcctcTCGCTGCCTGTTTTGAATGTATTGGTATTGTCCATTCATAATAAAGCCTCTTTTAA
>XM_022683427.1
ATGGATTTGAGGACTGGAAAACTGATCCAAAAACTATCCCAGGGACCTGAAACTGACCAGCCTGAAGATAATGGTAAAATCTGCAGCCTGACCATCTCTAAGGCGACCCTGCAGGACTCAGGCATGTATTACTGCACAGGTGTTCATAATTTAATTGCGTTAATCGGAAACGGCACCCGGGTCATCGTCACAGctccaaaaatcagtaGTAGTACTAATAGTGCTGTTTCTTGTAGATCGTGCCCGTttcaatccatccatcatctTGTACTCTCCTTTGGACGTGTCCGGCCCCATCGTTCCCCTGCAGTGTTTGGTGATGGGAGCTGTCCCTCTCAGGTACAGGTCTCCTGGATCATTGACCAAACTGAGCGTGAAGGATGGACAGAGTCGAGCTGGACAGAAAACAGTGATTCGGCTCAGGAATACACTCGAGCTCAGATCACTCTTTCTGAGGAAGAGTGGAGGAAAGCTGATCTGATCGAGTGTTTCGTCGCATACGACGGCAAAAACACCTCTAAACGTCTGGAGAAACAGGTTGTAGGTGTGTGTACCTGGCCTCTGTACCTGGGCTTCGGGGTTGCATTCGTCACGGTCACTGTCACTGTCACTGTTGTCGTTTGTTTTTGCAGAGCTAAAAGGGGCCTTGGGGGGAAGGTTCAGGACAAACAGAAGAATCATGgaaaacaaaacttacTGAAGCCCACCTCAGAGACCTGGACAgTTGTGGAATATTCCTGCTATAATCCAGACCACAGTGTGTTTGAACCTTTGATTAAAACTTAAGCTCTTTAATTTTCCAGCttagcaaaaaaatacaattatatatacTTACTTGTACTGACAAGTCTCTTTTTTAGTGTCTAAAAGAGAAACTGACTATAAACTAAAACTGTTGGAAGAAAAGAgatatttgaaataaaatgtaaatatgtgcCCGGACTCTTGCACCCCTCACTGTACTGAACACGTGATTCTCCCTCCCTAGCTCTTAATCACCTGATTTTGTAGATTCACCTGGTCCCCATAGTATATATACCTCCTGTTTTCCATAGTTCTTTGGAGAGTTTTATTTGGGTAATCTATTATTCATTGCAAagcattttccatttttgtgttttctctgtgtatGACCCCATGCCTGATTTTTgagtattgtattgtttttgttttacaatgtACCTACTTTAGACTGTTTAACTAACCCAATAATTTgctgatttttgtatttttgcctcTCGCTGCCTGTTTTGAATGTATTGGTATTGTCCATTCATAATAAAGCCTCTTTTAAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267630 True 1457 TUCP 0.43 7 12889358 12928524
XM_022683427.1 False 1297 mRNA 0.42 8 12925090 12928527

Neighbor

gene id symbol gene type direction distance location
LOC111195554 NA coding upstream 100580 12784178 ~ 12788778 (+)
LOC103026839 txnip,txnipa,LOC108410889,LOC107672857,LOC107738596,LOC107702541,LOC107731569 coding upstream 181190 12703854 ~ 12708168 (+)
LOC103026238 LOC108410890 coding upstream 274176 12535431 ~ 12615182 (+)
rnmt rnmt coding upstream 869497 12004826 ~ 12019861 (+)
ldlrad4 ldlrad4,ldlrad4a,LOC107675658,LOC107668709,LOC107566561 coding upstream 897875 11873941 ~ 11991483 (+)
LOC103030274 NA coding downstream 69062 12997589 ~ 12999507 (+)
LOC111195514 NA coding downstream 100381 13028908 ~ 13030890 (+)
LOC111195511 NA coding downstream 112664 13041191 ~ 13043435 (+)
LOC111195512 NA coding downstream 141956 13070483 ~ 13072657 (+)
LOC103041798 NA coding downstream 157219 13085746 ~ 13087926 (+)
G197175 NA non-coding upstream 3347 12885623 ~ 12886011 (+)
G197174 NA non-coding upstream 3873 12885202 ~ 12885485 (+)
G197099 mtx1b,mtx1,LOC103026555,LOC108410892,LOC108272909,LOC105901471 non-coding upstream 195453 12662051 ~ 12693905 (+)
G197097 NA non-coding upstream 248344 12640778 ~ 12641014 (+)
G197090 NA non-coding upstream 264753 12622009 ~ 12624605 (+)
G197188 NA non-coding downstream 542 12929069 ~ 12929331 (+)
G197189 NA non-coding downstream 882 12929409 ~ 12929695 (+)
G197190 NA non-coding downstream 2079 12930606 ~ 12930943 (+)
G197197 NA non-coding downstream 9830 12938357 ~ 12938641 (+)
G197198 NA non-coding downstream 11787 12940314 ~ 12941082 (+)
G197106 NA other upstream 114862 12715368 ~ 12774496 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other upstream 1143123 11687399 ~ 11746235 (+)
polr2k NA other upstream 1334775 11551660 ~ 11554583 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other upstream 1471655 11402155 ~ 11417703 (+)
samd14 samd14 other upstream 1858089 11011041 ~ 11031269 (+)
s100a14 s100a14,LOC108442988 other downstream 28143 12956670 ~ 12964349 (+)
G197334 LOC108441809 other downstream 395859 13324386 ~ 13362658 (+)
rpa3 NA other downstream 1348264 14276791 ~ 14293068 (+)
tac1 tac1 other downstream 1537738 14466265 ~ 14468882 (+)
G197665 NA other downstream 1865893 14794420 ~ 14796728 (+)

Expression


Co-expression Network