G197198


Basic Information

Item Value
gene id G197198
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 12940314 ~ 12941082 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU267670
gtaaacaagcagattacaggctgataaaactcacctctgagagagttagcgcttagcatctagctaatgctagccaggcaaagcagcacagacttacaggccgataactcacctctgaacggtgaacgcttagcgattagcatctaactctaataatactgctccagcagtattaaaagtgctaaatttagaaaatactgatctctgaacagtgaaaaagctagctagctaagcggttagcatctagctaatgctattgctgctccagcctcggagcggcacggctctgcacggagtgtgtgtttactgctccttacaacctgacgagtaaaatttagataatactgatctcagtgaataagctagctagcttagcggttagcatctagctaatgctattgctgctcagcctcggagctgcacggctctggactctgtatagcactgaaactctctataacgctgcacggagtgtgtgtttactgctccttacaacctgacgagtaaaatccatacaaaaggcgcaccgtattataagacgcactgtcaatttttgtgaaaattaaaagtttttaagtgcgccttatagtccgaaaaatacggtatgtac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267670 True 610 lncRNA 0.44 2 12940314 12941082

Neighbor

gene id symbol gene type direction distance location
LOC103028905 NA coding upstream 35688 12898727 ~ 12904626 (+)
LOC107197759 NA coding upstream 43862 12893219 ~ 12896452 (+)
LOC111195554 NA coding upstream 151536 12784178 ~ 12788778 (+)
LOC103026839 txnip,txnipa,LOC108410889,LOC107672857,LOC107738596,LOC107702541,LOC107731569 coding upstream 232146 12703854 ~ 12708168 (+)
LOC103026238 LOC108410890 coding upstream 325132 12535431 ~ 12615182 (+)
LOC103030274 NA coding downstream 56507 12997589 ~ 12999507 (+)
LOC111195514 NA coding downstream 87826 13028908 ~ 13030890 (+)
LOC111195511 NA coding downstream 100109 13041191 ~ 13043435 (+)
LOC111195512 NA coding downstream 129401 13070483 ~ 13072657 (+)
LOC103041798 NA coding downstream 144664 13085746 ~ 13087926 (+)
G197197 NA non-coding upstream 1673 12938357 ~ 12938641 (+)
G197190 NA non-coding upstream 9371 12930606 ~ 12930943 (+)
G197189 NA non-coding upstream 10619 12929409 ~ 12929695 (+)
G197188 NA non-coding upstream 10983 12929069 ~ 12929331 (+)
G197175 NA non-coding upstream 54303 12885623 ~ 12886011 (+)
G197199 LOC108442976 non-coding downstream 770 12941852 ~ 12942284 (+)
G197206 NA non-coding downstream 53750 12994832 ~ 12996875 (+)
G197213 NA non-coding downstream 91001 13032083 ~ 13033290 (+)
G197227 NA non-coding downstream 155470 13096552 ~ 13096872 (+)
G197230 NA non-coding downstream 172409 13113491 ~ 13113692 (+)
LOC103029421 NA other upstream 11787 12889358 ~ 12928527 (+)
G197106 NA other upstream 165818 12715368 ~ 12774496 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other upstream 1194079 11687399 ~ 11746235 (+)
polr2k NA other upstream 1385731 11551660 ~ 11554583 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other upstream 1522611 11402155 ~ 11417703 (+)
s100a14 s100a14,LOC108442988 other downstream 15588 12956670 ~ 12964349 (+)
G197334 LOC108441809 other downstream 383304 13324386 ~ 13362658 (+)
rpa3 NA other downstream 1335709 14276791 ~ 14293068 (+)
tac1 tac1 other downstream 1525183 14466265 ~ 14468882 (+)
G197665 NA other downstream 1853338 14794420 ~ 14796728 (+)

Expression


Co-expression Network