G197199 (LOC108442976)


Basic Information

Item Value
gene id G197199
gene name LOC108442976
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 12941852 ~ 12942284 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU267671
ACCCTGGAACCGTTGCCAATGTGGGCAAACTTGCCTTGCACCACCACACAGTAGTACATGCCGGAATCCTGCACTGTCTGACTGGAGATGACTGCAGAGCACACCTCAGTCCATCCGTATGAAGAAGACTTTATAGTGACTTTAGACGGGTCGGTTTTACTCAGGGTCATGTTATCAGAGTAGGTTCTCAACCAGGTCACACTGCAGCACGGTGAATATAACTCAATCACGCTGCAGTTTAGAGTAACGGTCTGTCCAGTTGTTACCACCACCACATCTGGCCACTGAGTCACGATGGAGGGATTTGagtctgtaataaaaaaaaacatattaaaaaattaagagtccacttcagtttctgaattagtttctcagattttgctatttatagctatatgtttgagtaaaatgatgtTAGTAAAcctactttaat

Function

NR:

description
PREDICTED: uncharacterized protein LOC108442976

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267671 True 433 lncRNA 0.42 1 12941852 12942284

Neighbor

gene id symbol gene type direction distance location
LOC103028905 NA coding upstream 37226 12898727 ~ 12904626 (+)
LOC107197759 NA coding upstream 45400 12893219 ~ 12896452 (+)
LOC111195554 NA coding upstream 153074 12784178 ~ 12788778 (+)
LOC103026839 txnip,txnipa,LOC108410889,LOC107672857,LOC107738596,LOC107702541,LOC107731569 coding upstream 233684 12703854 ~ 12708168 (+)
LOC103026238 LOC108410890 coding upstream 326670 12535431 ~ 12615182 (+)
LOC103030274 NA coding downstream 55305 12997589 ~ 12999507 (+)
LOC111195514 NA coding downstream 86624 13028908 ~ 13030890 (+)
LOC111195511 NA coding downstream 98907 13041191 ~ 13043435 (+)
LOC111195512 NA coding downstream 128199 13070483 ~ 13072657 (+)
LOC103041798 NA coding downstream 143462 13085746 ~ 13087926 (+)
G197198 NA non-coding upstream 770 12940314 ~ 12941082 (+)
G197197 NA non-coding upstream 3211 12938357 ~ 12938641 (+)
G197190 NA non-coding upstream 10909 12930606 ~ 12930943 (+)
G197189 NA non-coding upstream 12157 12929409 ~ 12929695 (+)
G197188 NA non-coding upstream 12521 12929069 ~ 12929331 (+)
G197206 NA non-coding downstream 52548 12994832 ~ 12996875 (+)
G197213 NA non-coding downstream 89799 13032083 ~ 13033290 (+)
G197227 NA non-coding downstream 154268 13096552 ~ 13096872 (+)
G197230 NA non-coding downstream 171207 13113491 ~ 13113692 (+)
G197308 NA non-coding downstream 198885 13141169 ~ 13141482 (+)
LOC103029421 NA other upstream 13325 12889358 ~ 12928527 (+)
G197106 NA other upstream 167356 12715368 ~ 12774496 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other upstream 1195617 11687399 ~ 11746235 (+)
polr2k NA other upstream 1387269 11551660 ~ 11554583 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other upstream 1524149 11402155 ~ 11417703 (+)
s100a14 s100a14,LOC108442988 other downstream 14386 12956670 ~ 12964349 (+)
G197334 LOC108441809 other downstream 382102 13324386 ~ 13362658 (+)
rpa3 NA other downstream 1334507 14276791 ~ 14293068 (+)
tac1 tac1 other downstream 1523981 14466265 ~ 14468882 (+)
G197665 NA other downstream 1852136 14794420 ~ 14796728 (+)

Expression


Co-expression Network