s100a14 (s100a14,LOC108442988)


Basic Information

Item Value
gene id s100a14
gene name s100a14,LOC108442988
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 12956670 ~ 12964349 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU267673
GCCAAGATGTGACAGCAGTGGAAAGCTGAGCGAGTAAAGTAACAATTACTGAacggagagagaggagaagggaGAAGATAAGACACAATGGCGGAAGAGtTGTCAGATTTGGAGAAGGCCATTAACACTCTGGTCACAAACTTCCACTCGGCTTCGGCTGACAAAGGCCCCTCACTGAAGGCAGATGAATTCAAGAACCTTCTTTCCTCCCAGCTGCCTAACCTTGTCAAGACCACAGGAGGAGATGCCGGTTTCGGAGAGGTGATGAAGCTAATGGGGGTAAAGGATGGAGAGGGAATAACCTTCAAACACTTCTGGTCCCTGATCCAAAATGTGGCTTCAAGCCAGTATGGCCAGCTCAGTCACGAGAAGGTGTCCAAATGCACCTGCCTTCTACTGTGATCGCCAGGCATCATCCGCAGACCCGGTCGAAATGGAGTGATGCTGCTAACACCAAGATTTGATCTCTGTTGTTCTCCATTTAACCAGTTATAcccattttatttttcaaaacacTAACAGCCCTTATACAACCATCTATTCTTTCAGTGAAAATGTCAGTGCTTAATAAGTATTTGCTACAAAGCCTCAGATCTCTAGGCACGAGCCGACTTAGAATCACAATCAGTGTGTATCATGTCTAAAGTGGCCACAAATCTCTTTGTAAAACTGCACAATTAGCATGAATTATTGTAAACTGgagtattgtaaaatatatttttccactATATCTGCATATGTCAAAGGCATCAGCAAACTTATTGCTTGACCAATAGAGACCATTGTggtcagaatgttttttttttatgttttgtttttatctgtAACACCACTAGTATTGTCTCATACAATGTTTAGTATGTTTGTGAGTAATAACACAAGTCTGTGACTTCTCACCATCCTGTTTAAAAGTGTATCCGTgccatttaaagttttaagagattgATACTTCTTCAGAAGGGTCGTCTTGCAGTTATATTTTTTctccatatttatattttgtagtTCTCCTTTTTCTGGCCGCAAATTCATTACTATTCTGCAATGTctaatgtaataaaacacaaaaac
>XM_007254715.3
CTCTGGAGTTTTGAGAGAATGTGGAGAAGCTGGAGAAGAAAACCGTGTGCTATGTGGCTATATGGAGCCCAAATCCCCGCCCTGCAGAGTTTACAGTCCCAGAGCATCAGATTACACAGCTCACCAACACGGTAGGTGGgttgatctgtgttttttttttttgctctgagTGGGAGGATTCGGGATTTGAGCCAAGATGTGACAGCAGTGGAAAGCTGAGCGAGTAAAGTAACAATTACTGAacggagagagaggagaagggaGAAGATAAGACACAATGGCGGAAGAGtctcagtTGTCAGATTTGGAGAAGGCCATTAACACTCTGGTCACAAACTTCCACTCGGCTTCGGCTGACAAAGGCCCCTCACTGAAGGCAGATGAATTCAAGAACCTTCTTTCCTCCCAGCTGCCTAACCTTGTCAAGACCACAGGAGGAGATGCCGGTTTCGGAGAGGTGATGAAGCTAATGGGGGTAAAGGATGGAGAGGGAATAACCTTCAAACACTTCTGGTCCCTGATCCAAAATGTGGCTTCAAGCCAGTATGGCCAGCTCAGTCACGAGAAGGTGTCCAAATGCACCTGCCTTCTACTGTGATCGCCAGGCATCATCCGCAGACCCGGTCGAAATGGAGTGATGCTGCTAACACCAAGATTTGATCTCTGTTGTTCTCCATTTAACCAGTTATAcccattttatttttcaaaacacTAACAGCCCTTATACAACCATCTATTCTTTCAGTGAAAATGTCAGTGCTTAATAAGTATTTGCTACAAAGCCTCAGATCTCTAGGCACGAGCCGACTTAGAATCACAATCAGTGTGTATCATGTCTAAAGTGGCCACAAATCTCTTTGTAAAACTGCACAATTAGCATGAATTATTGTAAACTGgagtattgtaaaatatatttttccactATATCTGCATATGTCAAAGGCATCAGCAAACTTATTGCTTGACCAATAGAGACCATTGTggtcagaatgttttttttttatgttttgtttttatctgtAACACCACTAGTATTGTCTCATACAATGTTTAGTATGTTTGTGAGTAATAACACAAGTCTGTGACTTCTCACCATCCTGTTTAAAAGTGTATCCGTgccatttaaagttttaagagattgATACTTCTTCAGAAGGGTCGTCTTGCAGTTATATTTTTTctccatatttatattttgtagtTCTCCTTTTTCTGGCCGCAAATTCATTACTATTCTGCAATGTctaatgtaataaaacacaaaaacccTCA

Function

symbol description
s100a14 Enables chemokine receptor binding activity. Involved in positive regulation of leukocyte chemotaxis; response to bacterium; and toll-like receptor 4 signaling pathway. Located in perinuclear region of cytoplasm.

NR:

description
PREDICTED: protein S100-A14

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267673 False 1071 TUCP 0.40 3 12956860 12964344
XM_007254715.3 True 1272 mRNA 0.42 3 12956670 12964349

Neighbor

gene id symbol gene type direction distance location
LOC103028905 NA coding upstream 52044 12898727 ~ 12904626 (+)
LOC107197759 NA coding upstream 60218 12893219 ~ 12896452 (+)
LOC111195554 NA coding upstream 167892 12784178 ~ 12788778 (+)
LOC103026839 txnip,txnipa,LOC108410889,LOC107672857,LOC107738596,LOC107702541,LOC107731569 coding upstream 248502 12703854 ~ 12708168 (+)
LOC103026238 LOC108410890 coding upstream 341488 12535431 ~ 12615182 (+)
LOC103030274 NA coding downstream 33240 12997589 ~ 12999507 (+)
LOC111195514 NA coding downstream 64559 13028908 ~ 13030890 (+)
LOC111195511 NA coding downstream 76842 13041191 ~ 13043435 (+)
LOC111195512 NA coding downstream 106134 13070483 ~ 13072657 (+)
LOC103041798 NA coding downstream 121397 13085746 ~ 13087926 (+)
G197199 LOC108442976 non-coding upstream 14386 12941852 ~ 12942284 (+)
G197198 NA non-coding upstream 15588 12940314 ~ 12941082 (+)
G197197 NA non-coding upstream 18029 12938357 ~ 12938641 (+)
G197190 NA non-coding upstream 25727 12930606 ~ 12930943 (+)
G197189 NA non-coding upstream 26975 12929409 ~ 12929695 (+)
G197206 NA non-coding downstream 30483 12994832 ~ 12996875 (+)
G197213 NA non-coding downstream 67734 13032083 ~ 13033290 (+)
G197227 NA non-coding downstream 132203 13096552 ~ 13096872 (+)
G197230 NA non-coding downstream 149142 13113491 ~ 13113692 (+)
G197308 NA non-coding downstream 176820 13141169 ~ 13141482 (+)
LOC103029421 NA other upstream 28143 12889358 ~ 12928527 (+)
G197106 NA other upstream 182174 12715368 ~ 12774496 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other upstream 1210435 11687399 ~ 11746235 (+)
polr2k NA other upstream 1402087 11551660 ~ 11554583 (+)
mrpl24 mrpl24,LOC107559719,LOC107669969,LOC107693309,LOC107580210 other upstream 1538967 11402155 ~ 11417703 (+)
G197334 LOC108441809 other downstream 360037 13324386 ~ 13362658 (+)
rpa3 NA other downstream 1312442 14276791 ~ 14293068 (+)
tac1 tac1 other downstream 1501916 14466265 ~ 14468882 (+)
G197665 NA other downstream 1830071 14794420 ~ 14796728 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other downstream 2797574 15761923 ~ 15789854 (+)

Expression


Co-expression Network