G197213


Basic Information

Item Value
gene id G197213
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 13032083 ~ 13033290 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU267685
acggtatgagattttcacggtatgataaccgtctcagaaaataccgcggtatcacggttatcacggtatcacagtttgttacatatattattaaactgacccttaaagaaattacaacaaaggttttttgttcaattaactatttattgtagaaacctggaacaactatatagataatgtctccttaaaaaaataaactgtacaccattaggtgaaggaaaccaggtttttccactactcttaaggtcattaagggtgtatataatatatatatatatatatatacacacacacacacacacacacacacgtgtcacacattacatgtcctctaagaagtaaagatcctgtgtttaaactattcagtacaattatttaagtttaaattatttaatatctgataaactgagcctgggtcagtgtctgatcaacaactgttgtaaacgtccgttttactgccaagttggtatataaccagatagaggggatttatttctgagtctggttttaacacatgaaaaacaggcacgtcagaatttgaaaattaacgcatgtaaatgaatggcgtctttcacatccagtccggcgagcacctttacacggacacgtgaatccgtcgtagcacgcacttcacgcctgtacctgcgtgcccaaatttcggataactcagcgcttttgcgggcgcttaccgcatgggttgtgcacgactacaaagaggttttatttatgttcagattaaaattataaactaaacacatactttgcgctgcacggcggggtggtgttcttggagatgggagaacaggtttgacgtatgtccacctttagctgtgactttacggccacattgattataaatcggataaccatcctcgggtgcgttcggcgggtctctgaaatagtcccacactgctgattttagtttagccttttttttaggcggacggagatttgtttagtctgatgcactttctgctgttctcaccgctgtgtgctgagcagctgaagcggagcagagttgcgcatgcgcgggtgagtttctccgctggcttgcgttttaccggtaataagcaaacacacacggtatgataaccgtgcattttaataccatggtataccgtgaaaccggttaccgctgcaaccctac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267685 True 1147 lncRNA 0.41 2 13032083 13033290

Neighbor

gene id symbol gene type direction distance location
LOC111195514 NA coding upstream 1193 13028908 ~ 13030890 (+)
LOC103030274 NA coding upstream 32576 12997589 ~ 12999507 (+)
LOC103028905 NA coding upstream 127457 12898727 ~ 12904626 (+)
LOC107197759 NA coding upstream 135631 12893219 ~ 12896452 (+)
LOC111195554 NA coding upstream 243305 12784178 ~ 12788778 (+)
LOC111195511 NA coding downstream 7901 13041191 ~ 13043435 (+)
LOC111195512 NA coding downstream 37193 13070483 ~ 13072657 (+)
LOC103041798 NA coding downstream 52456 13085746 ~ 13087926 (+)
thap7 NA coding downstream 56227 13089517 ~ 13094495 (+)
LOC103031854 NA coding downstream 65747 13099037 ~ 13112053 (+)
G197206 NA non-coding upstream 35208 12994832 ~ 12996875 (+)
G197199 LOC108442976 non-coding upstream 89799 12941852 ~ 12942284 (+)
G197198 NA non-coding upstream 91001 12940314 ~ 12941082 (+)
G197197 NA non-coding upstream 93442 12938357 ~ 12938641 (+)
G197190 NA non-coding upstream 101140 12930606 ~ 12930943 (+)
G197227 NA non-coding downstream 63262 13096552 ~ 13096872 (+)
G197230 NA non-coding downstream 80201 13113491 ~ 13113692 (+)
G197308 NA non-coding downstream 107879 13141169 ~ 13141482 (+)
G197309 NA non-coding downstream 110693 13143983 ~ 13144700 (+)
G197305 NA non-coding downstream 129003 13162293 ~ 13187854 (+)
s100a14 s100a14,LOC108442988 other upstream 67734 12956670 ~ 12964349 (+)
LOC103029421 NA other upstream 103556 12889358 ~ 12928527 (+)
G197106 NA other upstream 257587 12715368 ~ 12774496 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other upstream 1285848 11687399 ~ 11746235 (+)
polr2k NA other upstream 1477500 11551660 ~ 11554583 (+)
G197334 LOC108441809 other downstream 291096 13324386 ~ 13362658 (+)
rpa3 NA other downstream 1243501 14276791 ~ 14293068 (+)
tac1 tac1 other downstream 1432975 14466265 ~ 14468882 (+)
G197665 NA other downstream 1761130 14794420 ~ 14796728 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other downstream 2728633 15761923 ~ 15789854 (+)

Expression


Co-expression Network