G197227


Basic Information

Item Value
gene id G197227
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 13096552 ~ 13096872 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU267702
ctatacaaatgttatcaattagtatttgttaaataatatattacaggaaataagtagaaatatgtaggctacattaatatatatgtaaaaaaatactaacattaattgccattatgaaaaaaaaacatcaagagaataaaaccacgactgggattcgaactaggtttccatccggtgttctgtcgagttttgcaACCATGTCAAACCGTACTAccctagtgcatatttaatttttaaatataaaattgctagaaaaagccccatatttaaacatgctttcggtagaatatttggaaagcctgaatcaaaatatcaggagac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267702 True 321 lncRNA 0.30 1 13096552 13096872

Neighbor

gene id symbol gene type direction distance location
thap7 NA coding upstream 2057 13089517 ~ 13094495 (+)
LOC103041798 NA coding upstream 8626 13085746 ~ 13087926 (+)
LOC111195512 NA coding upstream 23895 13070483 ~ 13072657 (+)
LOC111195511 NA coding upstream 53117 13041191 ~ 13043435 (+)
LOC111195514 NA coding upstream 65662 13028908 ~ 13030890 (+)
LOC103031854 NA coding downstream 2165 13099037 ~ 13112053 (+)
LOC103032168 zgc:64022,LOC108441816,LOC107745031,LOC107550074,LOC107563933,LOC107748382,LOC107683352,LOC106569877 coding downstream 17629 13114501 ~ 13115971 (+)
chtop chtop coding downstream 192842 13289714 ~ 13298879 (+)
LOC103042102 LOC108441815,LOC105906352,LOC107748379,LOC107550076,LOC106588678 coding downstream 205023 13301895 ~ 13319691 (+)
LOC103036187 LOC103036187,LOC108441814 coding downstream 342620 13439492 ~ 13447223 (+)
G197213 NA non-coding upstream 63262 13032083 ~ 13033290 (+)
G197206 NA non-coding upstream 99677 12994832 ~ 12996875 (+)
G197199 LOC108442976 non-coding upstream 154268 12941852 ~ 12942284 (+)
G197198 NA non-coding upstream 155470 12940314 ~ 12941082 (+)
G197197 NA non-coding upstream 157911 12938357 ~ 12938641 (+)
G197230 NA non-coding downstream 16619 13113491 ~ 13113692 (+)
G197308 NA non-coding downstream 44297 13141169 ~ 13141482 (+)
G197309 NA non-coding downstream 47111 13143983 ~ 13144700 (+)
G197305 NA non-coding downstream 65421 13162293 ~ 13187854 (+)
G197317 NA non-coding downstream 140588 13237460 ~ 13240173 (+)
s100a14 s100a14,LOC108442988 other upstream 132203 12956670 ~ 12964349 (+)
LOC103029421 NA other upstream 168025 12889358 ~ 12928527 (+)
G197106 NA other upstream 322056 12715368 ~ 12774496 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other upstream 1350317 11687399 ~ 11746235 (+)
polr2k NA other upstream 1541969 11551660 ~ 11554583 (+)
G197334 LOC108441809 other downstream 227514 13324386 ~ 13362658 (+)
rpa3 NA other downstream 1179919 14276791 ~ 14293068 (+)
tac1 tac1 other downstream 1369393 14466265 ~ 14468882 (+)
G197665 NA other downstream 1697548 14794420 ~ 14796728 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other downstream 2665051 15761923 ~ 15789854 (+)

Expression


Co-expression Network