G197309


Basic Information

Item Value
gene id G197309
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 13143983 ~ 13144700 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU267796
aacagaaagtaattttaataataattcaaatgtacaaatgtgaaaaaaatattttaattatatataaatatatattttttaatttgtaaatccaaggagtttaataaaacaataatattcataactctaccagctccaatagaccaatagacgaccacctttcgacacgcccagtactctgagctgcagagacccacccattgttctgattggttaaacaaaccccataatctgattggtccggataaagctttcctattggttcatcaatcaggcgtcaaaacagggtcaaaattcgcaactgcagctagagcttcgcacccgcag
>TU267798
atcctctcattcatcttctctgctgtgtgtgcgaagctctagctgcagttgcgaattttgacccagtactctgagctgcagagacccacccattgttctgattggttaaacaaaccccataatctgattggtccggataaagctttcctattggttcatcaatcaggcgtcaaaacagggtcaaaattcgcaactgcagctagagcttcgcacccgcag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267796 True 327 lncRNA 0.35 2 13143983 13144700
TU267798 False 219 lncRNA 0.47 2 13144197 13144700

Neighbor

gene id symbol gene type direction distance location
LOC103032168 zgc:64022,LOC108441816,LOC107745031,LOC107550074,LOC107563933,LOC107748382,LOC107683352,LOC106569877 coding upstream 28012 13114501 ~ 13115971 (+)
LOC103031854 NA coding upstream 31930 13099037 ~ 13112053 (+)
thap7 NA coding upstream 49488 13089517 ~ 13094495 (+)
LOC103041798 NA coding upstream 56057 13085746 ~ 13087926 (+)
LOC111195512 NA coding upstream 71326 13070483 ~ 13072657 (+)
chtop chtop coding downstream 145014 13289714 ~ 13298879 (+)
LOC103042102 LOC108441815,LOC105906352,LOC107748379,LOC107550076,LOC106588678 coding downstream 157195 13301895 ~ 13319691 (+)
LOC103036187 LOC103036187,LOC108441814 coding downstream 294792 13439492 ~ 13447223 (+)
LOC103036495 NA coding downstream 310003 13454703 ~ 13463236 (+)
LOC103042421 NA coding downstream 318599 13463299 ~ 13468103 (+)
G197308 NA non-coding upstream 2501 13141169 ~ 13141482 (+)
G197230 NA non-coding upstream 30291 13113491 ~ 13113692 (+)
G197227 NA non-coding upstream 47111 13096552 ~ 13096872 (+)
G197213 NA non-coding upstream 110693 13032083 ~ 13033290 (+)
G197206 NA non-coding upstream 147108 12994832 ~ 12996875 (+)
G197305 NA non-coding downstream 17593 13162293 ~ 13187854 (+)
G197317 NA non-coding downstream 92760 13237460 ~ 13240173 (+)
G197325 snapin,LOC106569889 non-coding downstream 136982 13281682 ~ 13284517 (+)
G197331 sept7,LOC108441798,LOC108272655 non-coding downstream 233347 13378047 ~ 13438504 (+)
G197340 NA non-coding downstream 269660 13414360 ~ 13473071 (+)
s100a14 s100a14,LOC108442988 other upstream 179634 12956670 ~ 12964349 (+)
LOC103029421 NA other upstream 215456 12889358 ~ 12928527 (+)
G197106 NA other upstream 369487 12715368 ~ 12774496 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other upstream 1397748 11687399 ~ 11746235 (+)
polr2k NA other upstream 1589400 11551660 ~ 11554583 (+)
G197334 LOC108441809 other downstream 179686 13324386 ~ 13362658 (+)
rpa3 NA other downstream 1132091 14276791 ~ 14293068 (+)
tac1 tac1 other downstream 1321565 14466265 ~ 14468882 (+)
G197665 NA other downstream 1649720 14794420 ~ 14796728 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other downstream 2617223 15761923 ~ 15789854 (+)

Expression


Co-expression Network