G197325 (snapin,LOC106569889)


Basic Information

Item Value
gene id G197325
gene name snapin,LOC106569889
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 13281682 ~ 13284517 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU267827
GCCAGATTGtacattatatatttgcattgcgTGATACACTAAATGAGCATGGAATGCCTGGAGAGACACAAATTCAAATTTAACATAATGTTACATTCCGGATCTGCATATAAGACAACTcgtttttatttcacatttgctCCAAAATCTGCAAAACCCCAAACATAGGCTGTGCAtgaaaaaacaattacattaaTTTGTACAGCATATTATTACAggaattatacatattttaacatacagtatacatcATAATGCATAATGCTAGGTTTGAGTTAAAAGCAGACAATGTTAAACCCATTGGATTTAATACTCAAGAAGACATGGTATAGACACAAAACATGAACAAACAATTCAACACTCACAATCCTACTGTGCACTGTGTACAAATCTTAGTATACAGCAGTTTCTTTGGCTGCTAAAAATAAACGTATTAGCTAACAGCTAATTTAGCAGGACTCCACTTGAAGTCATGGTGCTGTGCAGTAATGTACAATAGATATACATGAAACTGGCCACGGTGTAGTGGTTCTGTTGTCATGGCTTGCTGGGAGATCGTGTGGAAAATGCTCCAGATGTTTCAAGCATAGTTTTTCTGCGGGCTGTCTCTTTAGCCACATTATGGTTCAACCTCCGTAAGCGTTCTTGAGCATTCTGGAGTATGTTGTTGACCAGAACCACTCTGCGTCGTGCATTAAGCAGCTTCTTCACATAGGGGTCTAAGTCAAGGGCAACCTTCTGGTGTTCATTAATTCTGCACAGCTCAGTTGCCAAGTTGTCAATGTGTTCTCGTAGTTCCACTTGACTCtccCTCACTGAATGCACATGTAGGTCGAGCTGCTGCACTGCGGGCTTTAAAAGACCTAATAAACCTTCTGCTATCGCATCCTTCCCAGACGGAGTCTCCACTACTGCCAGGGCCGCCATCGCTCCAACGCTAAAGCCTACAGGCAGCCAACTCTCGCGATATGTTCGTGTAATCCTAAGAGTCTTCTCGCGATAAGTTGGCCGGTAgacaagccccgcccactcgCTTATTCAGTGATTCGGTTGGGC
>TU267828
GCCAGATTGtacattatatatttgcattgcgTGATACACTAAATGAGCATGGAATGCCTGGAGAGACACAAATTCAAATTTAACATAATGTTACATTCCGGATCTGCATATAAGACAACTcgtttttatttcacatttgctCCAAAATCTGCAAAACCCCAAACATAGGCTGTGCAtgaaaaaacaattacattaaTTTGTACAGCATATTATTACAggaattatacatattttaacatacagtatacatcATAATGCATAATGCTAGGTTTGAGTTAAAAGCAGACAATGTTAAACCCATTGGATTTAATACTCAAGAAGACATGGTATAGACACAAAACATGAACAAACAATTCAACACTCACAATCCTACTGTGCACTGTGTACAAATCTTAGTATACAGCAGTTTCTTTGGCTGCTAAAAATAAACGTATTAGCTAACAGCTAATTTAGCAGGACTCCACTTGAAGTCATGGTGCTGTGCAGTAATGTACAATAGATATACATGAAACTGGCCACGGTGTAGTGGTTCTGTTGTCATGGCTTGCTGGGAGATCGTGTGGAAAATGCTCCAGATGTTTCAAGCATAGTTTTTCTGCGGGCTGTCTCTTTAGCCACATTATGGTTCAACCTCCGTAAGCGTTCTTGAGCATTCTGGAGTATGTTGTTGACCAGAACCACTCTGCGTCGTGCATTAAGCAGCTTCTTCACATAGGGGTCTAAGTCAAGGGCAACCTTCTGGTGTTCATTAATTCTGCACAGCTCAGTTGCCAAGTTGTCAATGTGTTCTCGTAGTTCCACTTGACTCtccct

Function

symbol description
snapin Predicted to enable SNARE binding activity. Predicted to be involved in several processes, including endosome to lysosome transport; regulation of synaptic vesicle exocytosis; and synaptic vesicle exocytosis. Predicted to act upstream of or within intracellular protein transport. Predicted to be located in synaptic vesicle membrane. Predicted to be part of BLOC-1 complex and BORC complex. Predicted to be active in synaptic vesicle. Orthologous to human SNAPIN (SNAP associated protein).

NR:

description
SNARE-associated protein Snapin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267827 True 1056 lncRNA 0.42 4 13281682 13284517
TU267828 False 813 lncRNA 0.39 3 13281682 13283122

Neighbor

gene id symbol gene type direction distance location
LOC103032168 zgc:64022,LOC108441816,LOC107745031,LOC107550074,LOC107563933,LOC107748382,LOC107683352,LOC106569877 coding upstream 165711 13114501 ~ 13115971 (+)
LOC103031854 NA coding upstream 169629 13099037 ~ 13112053 (+)
thap7 NA coding upstream 187187 13089517 ~ 13094495 (+)
LOC103041798 NA coding upstream 193756 13085746 ~ 13087926 (+)
LOC111195512 NA coding upstream 209025 13070483 ~ 13072657 (+)
chtop chtop coding downstream 5197 13289714 ~ 13298879 (+)
LOC103042102 LOC108441815,LOC105906352,LOC107748379,LOC107550076,LOC106588678 coding downstream 17378 13301895 ~ 13319691 (+)
LOC103036187 LOC103036187,LOC108441814 coding downstream 154975 13439492 ~ 13447223 (+)
LOC103036495 NA coding downstream 170186 13454703 ~ 13463236 (+)
LOC103042421 NA coding downstream 178782 13463299 ~ 13468103 (+)
G197317 NA non-coding upstream 41509 13237460 ~ 13240173 (+)
G197305 NA non-coding upstream 93828 13162293 ~ 13187854 (+)
G197309 NA non-coding upstream 136982 13143983 ~ 13144700 (+)
G197308 NA non-coding upstream 140200 13141169 ~ 13141482 (+)
G197230 NA non-coding upstream 167990 13113491 ~ 13113692 (+)
G197331 sept7,LOC108441798,LOC108272655 non-coding downstream 93530 13378047 ~ 13438504 (+)
G197340 NA non-coding downstream 129843 13414360 ~ 13473071 (+)
G197341 NA non-coding downstream 169302 13453819 ~ 13475449 (+)
G197406 NA non-coding downstream 281851 13566368 ~ 13567811 (+)
G197410 NA non-coding downstream 301716 13586233 ~ 13605958 (+)
s100a14 s100a14,LOC108442988 other upstream 317333 12956670 ~ 12964349 (+)
LOC103029421 NA other upstream 353155 12889358 ~ 12928527 (+)
G197106 NA other upstream 507186 12715368 ~ 12774496 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other upstream 1535447 11687399 ~ 11746235 (+)
polr2k NA other upstream 1727099 11551660 ~ 11554583 (+)
G197334 LOC108441809 other downstream 39869 13324386 ~ 13362658 (+)
rpa3 NA other downstream 992274 14276791 ~ 14293068 (+)
tac1 tac1 other downstream 1181748 14466265 ~ 14468882 (+)
G197665 NA other downstream 1509903 14794420 ~ 14796728 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other downstream 2477406 15761923 ~ 15789854 (+)

Expression


Co-expression Network