G197334 (LOC108441809)


Basic Information

Item Value
gene id G197334
gene name LOC108441809
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 13324386 ~ 13362658 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU267852
TATCTCAGTattgctttatttcacttcattacaaatgttttttggcACATGTGCAATTTCACACTCCATTCACACATACATCCCtccttatatttaaatatctgattTAATAGAATTTCtctacatttaaaaagaatttaGTGCTACACCATTTCTACTATACAACAGCTGTTAAAGCATCAGTCTCTTTTGTTCAAACATTGAACAGTCCTGAAGTGATGTCACTGTGGCACTGCAGCAGGTCACCCCTTTGTCAAACCACGACGACCATGTCCCTACGTTTTAAAGGTCACCGCTCGTGTTTTGGCATGATGTCATCCCTCTCCAGCACGGCTACGCTGCTGCTGCCGTTTTGGAGCGGTTCCTTCATAACTACGTCCATGTAAAACTCCGCCATGACCGGACAGTGCTCTGAGGCCACTCCACCCCATGACCAGTTATCAGGGATCCAGGGATTGGTCAGGCCCTCCCTCACAACAGAGCATTCACTGTGTAGATCTTCTTCATTGTCCGGCTGGCCCAGATGTTGTCCAGTGCAGAGGAGCCTTGTGGTGATTTGGTGCTGATGTTGGTGTAGACAGATGGGGGCAGGAGAGCAAGGAGTTTCTCCTTCTTCAGAACGTCCAACTCCGCACTGTCCGGGGGCATCCCGAAACCGCCCAACACCAACACGTCCTTCACCCCTTTAAGGCTGTCGTGTACAGTGGCGTTCAGTCTGTGGTTTTTTGTTCGGTCAGTGCCGTGTTTCCGCCCATTCTGCTCTTTCTTCTGCGCTGGAGTTTTCAGATGAACGTTCACCAAGGTGAGCTCAGATGATCCGATGTAAAAATGAGCAAGGTAGGGTTTAGTCTGGCCATGGTTTCCATTGCCATTAGTAGCAGCGTTGTCAATCACCACAGTGTCCTTCAGCTCGATACCGACCGACGAGTCCCAGAGGAACCCGGAATATTCTGAACCCTGCACAgaacaaagcacacaaacacattagcCTATTTTCTTGCTAAGCCTTGCTTTTTTTAGTCAAAGCTTGTTTCAGAGTTCATACAccttttaaccaataaatttccaacagtgcagacatggacaataaaaccaaaaatgaactaaaactataatcaaattGATTATTGTAggtctaaaataattttgacacacaatctttaataataaaatgtgtgtcagatcctgagagctccattgtgtagggctaaattactgaattaactctgatcTGATGTAACTGTTAGCTCAGAATAGcttttctccatcaataaactaaaacacaaagatttgtagcccaaatttccatgactttttttcaa
>TU267853
TATCTCAGTattgctttatttcacttcattacaaatgttttttggcACATGTGCAATTTCACACTCCATTCACACATACATCCCtccttatatttaaatatctgattTAATAGAATTTCtctacatttaaaaagaatttaGTGCTACACCATTTCTACTATACAACAGCTGTTAAAGCATCAGTCTCTTTTGTTCAAACATTGAACAGTCCTGAAGTGATGTCACTGTGGCACTGCAGCAGGTCACCCCTTTGTCAAACCACGACGACCATGTCCCTACGTTTTAAAGGTCACCGCTCGTGTTTTGGCATGATGTCATCCCTCTCCAGCACGGCTACGCTGCTGCTGCCGTTTTGGAGCGGTTCCTTCATAACTACGTCCATGTAAAACTCCGCCATGACCGGACAGTGCTCTGAGGCCACTCCACCCCATGACCAGTTATCAGGGATCCAGGGATTGGTCAGGCCCTCCCTCACAACAGAGCATTCACTGTGTAGATCTTCTTCATTGTCCGGCTGGCCCAGATGTTGTCCAGTGCAGAGGAGCCTTGTGGTGATTTGGTGCTGATGTTGGTGTAGACAGATGGGGGCAGGAGAGCAAGGAGTTTCTCCTTCTTCAGAACGTCCAACTCCGCACTGTCCGGGGGCATCCCGAAACCGCCCAACACCAACACGTCCTTCACCCCTTTAAGGCTGTCGTGTACAGTGGCGTTCAGTCTGTGGTTTTTTGTTCGGTCAGTGCCGTGTTTCCGCCCATTCTGCTCTTTCTTCTGCGCTGGAGTTTTCAGATGAACGTTCACCAAGGTGAGCTCAGATGATCCGATGTAAAAATGAGCAAGGTAGGGTTTAGTCTGGCCATGGTTTCCATTGCCATTAGTAGCAGCGTTGTCAATCACCACAGTGTCCTTCAGCTCGATACCGACCGACGAGTCCCAGAGGAACCCGGAATATTCTGAACCcTCGCTAGACTCTGCAGTGGGTTTCTCAGAAACTGAGCATTTCCACACTCCTCGAGGGCTTTTCCACTTGCGCACATTAAAGAGAGACGGCTGATTCAGCTCTGTGCAgaaCTTATTTAGAGCTTCACGGTCAGCCAGGTCCTGAACTGCTAATAACTTGATgTGGTTCTCCAGCAGGGTCATGCACACCACCTCCCTGACCCCGGGGTTGTTGGCCTTGTCGCTGGAGCAGCGCTGCAGGTCCCACGTGGCCACGCGGATCAGCGGCTTCTTGCCGTGGCTCGCGCGCTCCTCCACCGTCACCTCGGGGCGCGATGACATCATCTGCTCCGGACCCCCGGGGGGCAGGCTGTCAGTGGGGCTCGCGCTGCCGGTGTTGGTGATGCTGAGGTGCGCGTTCACGCCGGTACACCGCCGGGCGGCGGAGCTGCTGCGTaaggagggggaggaggaggaggactgaGCCGGGGATGATGAAGCCGGGGAGCCTCGGACGCAGATTTCCGGCTTCACGAGCTCCAGCCGAGCCGCCCCGACGCCGCTCACGAGCGCCAGGTCCTCCACCCTCCTGAAGCCGCCGATGCTCGCGCGGTGCTGCACGATGTTGCGCGCGAGAGCCCGCGTGACCCCGGGCAGGGTCATGAGCTCCTCCTCGGTGCAGGAGTTGATGTCCAGACACTGGTAGGggttcagctgctgctgctggagctcctgctggtgctgttgttgtAGCTGGAGTTGGAGCTGCTGCTTCACCAGAACATCGCTGAAGTTGCACGCGGCGCTCAGCTTGCGCCCCAGTTCACTCGGGTCGCGAGGGATCGACCGGTGGCACCCCAAACTGCCCCCCATAGCGCTGAGAGAGTCCTTAAACCAGCGCGCTTAGCTCACCATGAGATAGAGGTGTGTGTTCAGTCAGTAGTCCTGTCCCGCTGtctctgactgtgtgtgtggaagAGTGTGTGGTGAGCCTAAACGGGAGGCTGAGCTCCTGTAGGACTGAAGCGCTGC

Function

NR:

description
PREDICTED: endonuclease/exonuclease/phosphatase family domain-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267852 False 1322 lncRNA 0.44 4 13324386 13328709
TU267853 True 1968 TUCP 0.56 7 13324386 13362658

Neighbor

gene id symbol gene type direction distance location
LOC103042102 LOC108441815,LOC105906352,LOC107748379,LOC107550076,LOC106588678 coding upstream 4695 13301895 ~ 13319691 (+)
chtop chtop coding upstream 25507 13289714 ~ 13298879 (+)
LOC103032168 zgc:64022,LOC108441816,LOC107745031,LOC107550074,LOC107563933,LOC107748382,LOC107683352,LOC106569877 coding upstream 208415 13114501 ~ 13115971 (+)
LOC103031854 NA coding upstream 212333 13099037 ~ 13112053 (+)
thap7 NA coding upstream 229891 13089517 ~ 13094495 (+)
LOC103036187 LOC103036187,LOC108441814 coding downstream 76834 13439492 ~ 13447223 (+)
LOC103036495 NA coding downstream 92045 13454703 ~ 13463236 (+)
LOC103042421 NA coding downstream 100641 13463299 ~ 13468103 (+)
LOC103043039 NA coding downstream 297229 13659887 ~ 13666328 (+)
LOC103039331 si:dkeyp-92c9.3,LOC108273295,LOC107672858,LOC107702514,LOC106570358,LOC107738593,LOC108411155,LOC107731552,LOC107571466 coding downstream 307685 13670343 ~ 13794112 (+)
G197325 snapin,LOC106569889 non-coding upstream 39869 13281682 ~ 13284517 (+)
G197317 NA non-coding upstream 84213 13237460 ~ 13240173 (+)
G197305 NA non-coding upstream 136532 13162293 ~ 13187854 (+)
G197309 NA non-coding upstream 179686 13143983 ~ 13144700 (+)
G197308 NA non-coding upstream 182904 13141169 ~ 13141482 (+)
G197331 sept7,LOC108441798,LOC108272655 non-coding downstream 15389 13378047 ~ 13438504 (+)
G197340 NA non-coding downstream 51702 13414360 ~ 13473071 (+)
G197341 NA non-coding downstream 91161 13453819 ~ 13475449 (+)
G197406 NA non-coding downstream 203710 13566368 ~ 13567811 (+)
G197410 NA non-coding downstream 223575 13586233 ~ 13605958 (+)
s100a14 s100a14,LOC108442988 other upstream 360037 12956670 ~ 12964349 (+)
LOC103029421 NA other upstream 395859 12889358 ~ 12928527 (+)
G197106 NA other upstream 549890 12715368 ~ 12774496 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other upstream 1578151 11687399 ~ 11746235 (+)
polr2k NA other upstream 1769803 11551660 ~ 11554583 (+)
rpa3 NA other downstream 914133 14276791 ~ 14293068 (+)
tac1 tac1 other downstream 1103607 14466265 ~ 14468882 (+)
G197665 NA other downstream 1431762 14794420 ~ 14796728 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other downstream 2399265 15761923 ~ 15789854 (+)
ppp1r11 ppp1r11,LOC107694341 other downstream 2959284 16321942 ~ 16330240 (+)

Expression


Co-expression Network