G197410


Basic Information

Item Value
gene id G197410
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 13586233 ~ 13605958 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU267967
AGATACTGTACATcacatgtgtcaaacacaaggcccgcgggccaaatgtggcccgccacgttcttttatgtggcccgcgagaccttgtaagatcttagtgtctataataaataggtcagaagcgtgctttgaccaaaaactacatttcccacaatgcttgtcgattgtattacccgcgaagttacggcttactgccactacacggcagtgtagtcattgatgtggaaaccctgccggagggaaggtgtaacttcgcgggtggaattgagacatacaaatgttgatcccataatgtccagaaaaagaaagttgatgcagacggacggctgtgcttcaaggcgaaagaccggtatgccttttgtgttacgaagagtgtttctgac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267967 True 383 lncRNA 0.47 2 13586233 13605958

Neighbor

gene id symbol gene type direction distance location
LOC103042421 NA coding upstream 118130 13463299 ~ 13468103 (+)
LOC103036495 NA coding upstream 122997 13454703 ~ 13463236 (+)
LOC103036187 LOC103036187,LOC108441814 coding upstream 139010 13439492 ~ 13447223 (+)
LOC103042102 LOC108441815,LOC105906352,LOC107748379,LOC107550076,LOC106588678 coding upstream 266542 13301895 ~ 13319691 (+)
chtop chtop coding upstream 287354 13289714 ~ 13298879 (+)
LOC103043039 NA coding downstream 53929 13659887 ~ 13666328 (+)
LOC103039331 si:dkeyp-92c9.3,LOC108273295,LOC107672858,LOC107702514,LOC106570358,LOC107738593,LOC108411155,LOC107731552,LOC107571466 coding downstream 64385 13670343 ~ 13794112 (+)
LOC103030231 NA coding downstream 296809 13902767 ~ 13905038 (+)
LOC111195557 NA coding downstream 381079 13987037 ~ 13988938 (+)
col28a1 NA coding downstream 695952 14301910 ~ 14339402 (+)
G197406 NA non-coding upstream 18422 13566368 ~ 13567811 (+)
G197341 NA non-coding upstream 110784 13453819 ~ 13475449 (+)
G197340 NA non-coding upstream 113162 13414360 ~ 13473071 (+)
G197331 sept7,LOC108441798,LOC108272655 non-coding upstream 147729 13378047 ~ 13438504 (+)
G197325 snapin,LOC106569889 non-coding upstream 301716 13281682 ~ 13284517 (+)
LOC103039008 NA non-coding downstream 47726 13653684 ~ 13658653 (+)
G197459 NA non-coding downstream 111328 13717286 ~ 13718002 (+)
G197480 NA non-coding downstream 263588 13869546 ~ 13876652 (+)
G197487 NA non-coding downstream 293005 13898963 ~ 13900419 (+)
LOC111195567 NA non-coding downstream 308126 13914084 ~ 13917087 (+)
G197334 LOC108441809 other upstream 223575 13324386 ~ 13362658 (+)
s100a14 s100a14,LOC108442988 other upstream 621884 12956670 ~ 12964349 (+)
LOC103029421 NA other upstream 657706 12889358 ~ 12928527 (+)
G197106 NA other upstream 811737 12715368 ~ 12774496 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other upstream 1839998 11687399 ~ 11746235 (+)
rpa3 NA other downstream 670833 14276791 ~ 14293068 (+)
tac1 tac1 other downstream 860307 14466265 ~ 14468882 (+)
G197665 NA other downstream 1188462 14794420 ~ 14796728 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other downstream 2155965 15761923 ~ 15789854 (+)
ppp1r11 ppp1r11,LOC107694341 other downstream 2715984 16321942 ~ 16330240 (+)

Expression


Co-expression Network