G197550


Basic Information

Item Value
gene id G197550
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 14127431 ~ 14139128 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU268179
caaaaaaaaaaaaaaaaaaaaattccaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacacacaatatgaaaatacatagtaaaataatcaacatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatca
>TU268181
gaaaaaaaaaaaaaaaaaaaaaaaaaaaaagagaaccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacacacaatatgaaaatacatagtaaaataatcaacatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatca
>TU268182
aaaaaaaagagtaaatcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacacacaatatgaaaatacatagtaaaataatcaacatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatcatca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU268179 False 374 lncRNA 0.12 2 14138014 14139128
TU268181 True 381 lncRNA 0.12 2 14127431 14139128
TU268182 False 361 lncRNA 0.12 2 14138165 14139128

Neighbor

gene id symbol gene type direction distance location
LOC111195557 NA coding upstream 138493 13987037 ~ 13988938 (+)
LOC103030231 NA coding upstream 222393 13902767 ~ 13905038 (+)
LOC103039331 si:dkeyp-92c9.3,LOC108273295,LOC107672858,LOC107702514,LOC106570358,LOC107738593,LOC108411155,LOC107731552,LOC107571466 coding upstream 333319 13670343 ~ 13794112 (+)
LOC103043039 NA coding upstream 461103 13659887 ~ 13666328 (+)
LOC103042421 NA coding upstream 659328 13463299 ~ 13468103 (+)
col28a1 NA coding downstream 162782 14301910 ~ 14339402 (+)
sdhaf3 sdhaf3 coding downstream 210929 14350057 ~ 14364677 (+)
jarid2 jarid2 coding downstream 938416 15077544 ~ 15259664 (+)
mylip mylip,mylipa,LOC107754815,LOC107731572,LOC107694366 coding downstream 1261795 15400923 ~ 15434466 (+)
LOC103027820 npr1,npr1a,LOC108435512,LOC107694365,LOC107677481,LOC107754786,LOC106588322 coding downstream 1326364 15465492 ~ 15582858 (+)
G197547 NA non-coding upstream 53011 14069804 ~ 14074420 (+)
G197495 ptp4a3,LOC103031245,LOC108413163,LOC107702466,LOC107571462,LOC108272580,LOC107598212,LOC107738588,LOC107731571 non-coding upstream 95149 13917348 ~ 14032282 (+)
G197496 NA non-coding upstream 154688 13946514 ~ 13972743 (+)
LOC111195567 NA non-coding upstream 210344 13914084 ~ 13917087 (+)
G197487 NA non-coding upstream 227012 13898963 ~ 13900419 (+)
G197555 NA non-coding downstream 36211 14175339 ~ 14175670 (+)
G197557 NA non-coding downstream 54046 14193174 ~ 14197065 (+)
G197609 NA non-coding downstream 237350 14376478 ~ 14376705 (+)
G197617 NA non-coding downstream 270366 14409494 ~ 14446246 (+)
G197630 NA non-coding downstream 352931 14492059 ~ 14492550 (+)
G197334 LOC108441809 other upstream 764773 13324386 ~ 13362658 (+)
s100a14 s100a14,LOC108442988 other upstream 1163082 12956670 ~ 12964349 (+)
LOC103029421 NA other upstream 1198904 12889358 ~ 12928527 (+)
G197106 NA other upstream 1352935 12715368 ~ 12774496 (+)
grhl2 grhl2,LOC107748368,LOC107550099,LOC107738316,LOC107698657,LOC107672862,LOC107552317 other upstream 2381196 11687399 ~ 11746235 (+)
rpa3 NA other downstream 137663 14276791 ~ 14293068 (+)
tac1 tac1 other downstream 327137 14466265 ~ 14468882 (+)
G197665 NA other downstream 655292 14794420 ~ 14796728 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other downstream 1622795 15761923 ~ 15789854 (+)
ppp1r11 ppp1r11,LOC107694341 other downstream 2182814 16321942 ~ 16330240 (+)

Expression


Co-expression Network