tac1 (tac1)


Basic Information

Item Value
gene id tac1
gene name tac1
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 14466265 ~ 14468882 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU268310
AAGACGCAGCGGGAATCGGGAGCGCagtgcaaacacacactaacacatacacactctaacacactgaaacactaacacactctcacacattgaGAAAGGCGCACTCACCGCTCGTTTACGCACATGTGGAGGATACCGCCCGGTGAAGAAAGgccacagaaacagagagatttcCACTTCtgaagaaaaaagacagagaaactgagagactgagagactcTTTACTGAGTTAAATAAAAGGAGAGGAGGCGTTTCTTTCTGCGCTGCATCATGAAATTACTCTTACCGGTCGTAGTTTTTTGTTTCCTCGCTTTGTCTCAAGTTTTTGGGGAGGAATTTGGTCCAAAAGACGACCTCGATTACTGGACAAATGGCAACCAAATACAGGACGAGTGGCTTCAGGCTGATCCCTTCAGAGAGCTCCTGAGACGGATGACGAGAAAACCTCGACCACACCAGTTCATCGGCCTAATGGGGAAGCGCTCCTCCGCAGCTAATGCACAGATTAcaagaaaaagtaagaaaaacttttttatCTACAGACTAAGTGGTCTAGAAATCATCTACACAGATCTACATGTTCTACATATTGTATAAACACACACCACTGTAAGCTATAGAATATCACTGCATCAGGGCAACTTTACAGGATAAGAATAAaggct
>XM_022683092.1
TATGCAAAACATTATAAAGGACATTAGTCACAGGAAGTTTTGGGAAGATCTGGCACGGCGCACCGGATCGACTCGATTTTGATCGATTTTTGGTCCGCGTGCTCCTCCTGCCCGCGCGCTATAAAACGCAGCGCGCACCGGAGTTTTGGTGAGGAAGACGCAGCGGGAATCGGGAGCGCagtgcaaacacacactaacacatacacactctaacacactgaaacactaacacactctcacacattgaGAAAGGCGCACTCACCGCTCGTTTACGCACATGTGGAGGATACCGCCCGGTGAAGAAAGgccacagaaacagagagatttcCACTTCtgaagaaaaaagacagagaaactgagagactgagagactcTTTACTGAGTTAAATAAAAGGAGAGGAGGCGTTTCTTTCTGCGCTGCATCATGAAATTACTCTTACCGGTCGTAGTTTTTTGTTTCCTCGCTTTGTCTCAAGTTTTTGGGGAGGAATTTGGTCCAAAAGACGACCTCGATTACTGGACAAATGGCAACCAAATACAGGACGAGTGGCTTCAGGCTGATCCCTTCAGAGAGCTCCTGAGACGGATGACGAGAAAACCTCGACCACACCAGTTCATCGGCCTAATGGGGAAGCGCTCCTCCGCAGCTAATGCACAGATTAcaagaaaaagtaagaaaaacttttttatCTACAGACTAAGTGGTCTAGAAATCATCTACACAGATCTACATGTTCTACATATTGTATAAACACACACCACTGTAAGCTATAGAATATCACTGCATCAGGGCAACTTTACAGG

Function

symbol description
tac1 Predicted to enable substance P receptor binding activity. Predicted to be involved in inflammatory response; positive regulation of cytosolic calcium ion concentration; and tachykinin receptor signaling pathway. Predicted to act upstream of or within neuropeptide signaling pathway. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including basal plate midbrain region; cardiovascular system; nervous system; pleuroperitoneal region; and spinal cord neural tube. Orthologous to human TAC1 (tachykinin precursor 1).

NR:

description
PREDICTED: protachykinin-1

GO:

id name namespace
GO:0007217 tachykinin receptor signaling pathway biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0005576 extracellular region cellular_component

KEGG:

id description
K05239 TAC1; tachykinin 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU268310 False 665 TUCP 0.44 3 14466419 14468882
XM_022683092.1 True 804 mRNA 0.46 3 14466265 14468867

Neighbor

gene id symbol gene type direction distance location
sdhaf3 sdhaf3 coding upstream 101588 14350057 ~ 14364677 (+)
col28a1 NA coding upstream 126863 14301910 ~ 14339402 (+)
LOC111195557 NA coding upstream 477327 13987037 ~ 13988938 (+)
LOC103030231 NA coding upstream 561227 13902767 ~ 13905038 (+)
LOC103039331 si:dkeyp-92c9.3,LOC108273295,LOC107672858,LOC107702514,LOC106570358,LOC107738593,LOC108411155,LOC107731552,LOC107571466 coding upstream 672153 13670343 ~ 13794112 (+)
jarid2 jarid2 coding downstream 608662 15077544 ~ 15259664 (+)
mylip mylip,mylipa,LOC107754815,LOC107731572,LOC107694366 coding downstream 932041 15400923 ~ 15434466 (+)
LOC103027820 npr1,npr1a,LOC108435512,LOC107694365,LOC107677481,LOC107754786,LOC106588322 coding downstream 996610 15465492 ~ 15582858 (+)
ints3 ints3,LOC107754816 coding downstream 1123561 15592443 ~ 15611187 (+)
LOC103028143 LOC108273188 coding downstream 1146291 15615173 ~ 15632584 (+)
G197617 NA non-coding upstream 20019 14409494 ~ 14446246 (+)
G197609 NA non-coding upstream 89560 14376478 ~ 14376705 (+)
G197557 NA non-coding upstream 269200 14193174 ~ 14197065 (+)
G197555 NA non-coding upstream 290595 14175339 ~ 14175670 (+)
G197550 NA non-coding upstream 327137 14127431 ~ 14139128 (+)
G197630 NA non-coding downstream 23177 14492059 ~ 14492550 (+)
G197646 LOC107731557,LOC107754811,LOC107702657,LOC107672863 non-coding downstream 206639 14675521 ~ 14719538 (+)
G197657 NA non-coding downstream 268473 14737355 ~ 14745016 (+)
G197639 asns,LOC107672863,LOC107754811 non-coding downstream 302913 14771795 ~ 14773462 (+)
G197662 NA non-coding downstream 316239 14785121 ~ 14785740 (+)
rpa3 NA other upstream 173197 14276791 ~ 14293068 (+)
G197334 LOC108441809 other upstream 1103607 13324386 ~ 13362658 (+)
s100a14 s100a14,LOC108442988 other upstream 1501916 12956670 ~ 12964349 (+)
LOC103029421 NA other upstream 1537738 12889358 ~ 12928527 (+)
G197106 NA other upstream 1691769 12715368 ~ 12774496 (+)
G197665 NA other downstream 325538 14794420 ~ 14796728 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other downstream 1293041 15761923 ~ 15789854 (+)
ppp1r11 ppp1r11,LOC107694341 other downstream 1853060 16321942 ~ 16330240 (+)
atat1 atat1 other downstream 1876235 16345117 ~ 16359668 (+)
c23h5orf49 cunh5orf49,LOC103039620 other downstream 1919926 16388808 ~ 16393498 (+)

Expression


Co-expression Network