G197639 (asns,LOC107672863,LOC107754811)


Basic Information

Item Value
gene id G197639
gene name asns,LOC107672863,LOC107754811
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 14771795 ~ 14773462 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU268334
GCTGTTTTTTATTGACATGacaaaaatcatgaaaaacGAACAATACAATGTTGTAAAATTGTTCTGCGTTCAGTCTGCTGACTAAATCTGCCTGGTTACTGGTCCTTTTCTGGTTTGTAGATGGACAGGGTTCTGGCAGAGGGGTCAGTAGCTTTAATCCAGCGGGGCATCCAGTAGTGGGTGGTCCATTCACAGCACCCGGGGTAATGCTTCTCAAACAGCTGGCGGATGAAGAGGCCTTCTTTGGTAGTAGGGGGGTTATAAGGGAACTGCTTTTTGGCCTTCTGTAACTGTGAGTCATTTATCTTAGATTCAATGTTCTCCTGGAGGAAGGAATACCAGGACTTCTTTGTAGAGGTCATTCCATCACTGAAAGCCTCTTTACGTCTCCACAGTATCTCATCTGGAATCAGATCCAGCCCACTGAATGCTTCCCTCAGAAGATGCTTCTCCACACCATCCtcttaatgtgtttgagagcatcagttgtgttgtgaagaggtagagttggtatacagtaaatagagCAACTCAactcagtaaaga

Function

symbol description
asns Predicted to enable asparagine synthase (glutamine-hydrolyzing) activity. Predicted to be involved in asparagine biosynthetic process. Predicted to act upstream of or within cellular amino acid biosynthetic process and glutamine metabolic process. Predicted to be active in cytosol. Is expressed in liver and male organism. Orthologous to human ASNS (asparagine synthetase (glutamine-hydrolyzing)).

NR:

description
PREDICTED: asparagine synthetase [glutamine-hydrolyzing]-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU268334 True 546 lncRNA 0.44 3 14771795 14773462

Neighbor

gene id symbol gene type direction distance location
sdhaf3 sdhaf3 coding upstream 407118 14350057 ~ 14364677 (+)
col28a1 NA coding upstream 432393 14301910 ~ 14339402 (+)
LOC111195557 NA coding upstream 782857 13987037 ~ 13988938 (+)
LOC103030231 NA coding upstream 866757 13902767 ~ 13905038 (+)
LOC103039331 si:dkeyp-92c9.3,LOC108273295,LOC107672858,LOC107702514,LOC106570358,LOC107738593,LOC108411155,LOC107731552,LOC107571466 coding upstream 977683 13670343 ~ 13794112 (+)
jarid2 jarid2 coding downstream 304082 15077544 ~ 15259664 (+)
mylip mylip,mylipa,LOC107754815,LOC107731572,LOC107694366 coding downstream 627461 15400923 ~ 15434466 (+)
LOC103027820 npr1,npr1a,LOC108435512,LOC107694365,LOC107677481,LOC107754786,LOC106588322 coding downstream 692030 15465492 ~ 15582858 (+)
ints3 ints3,LOC107754816 coding downstream 818981 15592443 ~ 15611187 (+)
LOC103028143 LOC108273188 coding downstream 841711 15615173 ~ 15632584 (+)
G197657 NA non-coding upstream 26779 14737355 ~ 14745016 (+)
G197646 LOC107731557,LOC107754811,LOC107702657,LOC107672863 non-coding upstream 52257 14675521 ~ 14719538 (+)
G197630 NA non-coding upstream 279245 14492059 ~ 14492550 (+)
G197617 NA non-coding upstream 325549 14409494 ~ 14446246 (+)
G197609 NA non-coding upstream 395090 14376478 ~ 14376705 (+)
G197662 NA non-coding downstream 11659 14785121 ~ 14785740 (+)
G197663 bloc1s4,LOC105910270,LOC108410562,LOC107731556,LOC107598233,LOC107672822,LOC108272578 non-coding downstream 16408 14789870 ~ 14791210 (+)
G197716 NA non-coding downstream 526150 15299612 ~ 15355237 (+)
G197747 NA non-coding downstream 615092 15388554 ~ 15393678 (+)
G197848 sacm1l,LOC108435519,LOC107595621 non-coding downstream 1048016 15821478 ~ 15842757 (+)
tac1 tac1 other upstream 302913 14466265 ~ 14468882 (+)
rpa3 NA other upstream 478727 14276791 ~ 14293068 (+)
G197334 LOC108441809 other upstream 1409137 13324386 ~ 13362658 (+)
s100a14 s100a14,LOC108442988 other upstream 1807446 12956670 ~ 12964349 (+)
LOC103029421 NA other upstream 1843268 12889358 ~ 12928527 (+)
G197665 NA other downstream 20958 14794420 ~ 14796728 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other downstream 988461 15761923 ~ 15789854 (+)
ppp1r11 ppp1r11,LOC107694341 other downstream 1548480 16321942 ~ 16330240 (+)
atat1 atat1 other downstream 1571655 16345117 ~ 16359668 (+)
c23h5orf49 cunh5orf49,LOC103039620 other downstream 1615346 16388808 ~ 16393498 (+)

Expression


Co-expression Network