G197646 (LOC107731557,LOC107754811,LOC107702657,LOC107672863)


Basic Information

Item Value
gene id G197646
gene name LOC107731557,LOC107754811,LOC107702657,LOC107672863
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 14675521 ~ 14719538 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU268345
CCAGTTCGTGGTTGTAAATTTCACCATTGTAGCAAAGCCAGAGGTAGGGGAACTTCTTCACTCTAAGGGGCTGCATGCCATACAGCTGGTCCACAATGGCCAACCGGTGGAAACCGAAGCAGCAGTTGGTGAAACCATTGACATTCTCAAAGCGAAAAGCATCAGGACCTCGATGTGCAATCTTCATAGCGTTGGTGCACTGACTCGCCAGACACTCATCACTCCCAAATAACGCCCATATACCACACATTT
>TU268346
CAGTTCGTGGTTGTAAATTTCACCATTGTAGCAAAGCCAGAGGTAGGGGAACTTCTTCACTCTAAGGGGCTGCATGCCATACAGCTGGTCCACAATGGCCAACCGGTGGAAACCGAAGCAGCAGTTGGTGAAACCATTGACATTCTCAAAGCGAAAAGCATCAGGACCTCGATGTGCAATCTTCATAGCGTTGGTGCACTGACTCGCCAGACACTCATCACTCCCAAATAACGCCCATATACCACACATTT
>TU268347
CAGTTCGTGGTTGTAAATTTCACCATTGTAGCAAAGCCAGAGGTAGGGGAACTTCTTCACTCTAAGGGGCTGCATGCCATACAGCTGGTCCACAATGGCCAACCGGTGGAAACCGAAGCAGCAGTTGGTGAAACCATTGACATTCTCAAAGCGAAAAGCATCAGGACCTCGATGTGCAATCTTCATAGCGTTGGTGCACTGACTCGCCAGACACTCATCACTCCCAAATAACGCCCATATACCACACATTT
>TU268348
CAGTTCGTGGTTGTAAATTTCACCATTGTAGCAAAGCCAGAGGTAGGGGAACTTCTTCACTCTAAGGGGCTGCATGCCATACAGCTGGTCCACAATGGCCAACCGGTGGAAACCGAAGCAGCAGTTGGTGAAACCATTGACATTCTCAAAGCGAAAAGCATCAGGACCTCGATGTGCAATCTTCATAGCGTTGGTGCACTGACTCGCCAGACACTCATCACTCCCAAATAACGCCCATATACCACACATTT
>TU268349
CAGTTCGTGGTTGTAAATTTCACCATTGTAGCAAAGCCAGAGGTAGGGGAACTTCTTCACTCTAAGGGGCTGCATGCCATGCAGCTGGTCCACAATGGCCAACCGGTGGAAACCGAAGCAGCAGTTGGTGAAACCGTTGACATTCTCAAAGCGAAAAGCATCAGGACCTCGATGTGCAATCTTCATAGCGTTGGTGCACTGAATCGCCAGGCACTCATCACTCCCAAACAACGCCCATATACCACACATTTTGC

Function

NR:

description
PREDICTED: asparagine synthetase [glutamine-hydrolyzing]-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU268345 False 252 lncRNA 0.49 2 14676194 14678541
TU268346 False 251 lncRNA 0.49 2 14675521 14678541
TU268347 False 251 lncRNA 0.49 2 14676879 14678541
TU268348 False 251 lncRNA 0.49 2 14677551 14678541
TU268349 True 254 lncRNA 0.50 2 14675521 14719538

Neighbor

gene id symbol gene type direction distance location
sdhaf3 sdhaf3 coding upstream 310844 14350057 ~ 14364677 (+)
col28a1 NA coding upstream 336119 14301910 ~ 14339402 (+)
LOC111195557 NA coding upstream 686583 13987037 ~ 13988938 (+)
LOC103030231 NA coding upstream 770483 13902767 ~ 13905038 (+)
LOC103039331 si:dkeyp-92c9.3,LOC108273295,LOC107672858,LOC107702514,LOC106570358,LOC107738593,LOC108411155,LOC107731552,LOC107571466 coding upstream 881409 13670343 ~ 13794112 (+)
jarid2 jarid2 coding downstream 358006 15077544 ~ 15259664 (+)
mylip mylip,mylipa,LOC107754815,LOC107731572,LOC107694366 coding downstream 681385 15400923 ~ 15434466 (+)
LOC103027820 npr1,npr1a,LOC108435512,LOC107694365,LOC107677481,LOC107754786,LOC106588322 coding downstream 745954 15465492 ~ 15582858 (+)
ints3 ints3,LOC107754816 coding downstream 872905 15592443 ~ 15611187 (+)
LOC103028143 LOC108273188 coding downstream 895635 15615173 ~ 15632584 (+)
G197630 NA non-coding upstream 182971 14492059 ~ 14492550 (+)
G197617 NA non-coding upstream 229275 14409494 ~ 14446246 (+)
G197609 NA non-coding upstream 298816 14376478 ~ 14376705 (+)
G197557 NA non-coding upstream 478456 14193174 ~ 14197065 (+)
G197555 NA non-coding upstream 499851 14175339 ~ 14175670 (+)
G197657 NA non-coding downstream 17817 14737355 ~ 14745016 (+)
G197639 asns,LOC107672863,LOC107754811 non-coding downstream 52257 14771795 ~ 14773462 (+)
G197662 NA non-coding downstream 65583 14785121 ~ 14785740 (+)
G197663 bloc1s4,LOC105910270,LOC108410562,LOC107731556,LOC107598233,LOC107672822,LOC108272578 non-coding downstream 70332 14789870 ~ 14791210 (+)
G197716 NA non-coding downstream 580074 15299612 ~ 15355237 (+)
tac1 tac1 other upstream 206639 14466265 ~ 14468882 (+)
rpa3 NA other upstream 382453 14276791 ~ 14293068 (+)
G197334 LOC108441809 other upstream 1312863 13324386 ~ 13362658 (+)
s100a14 s100a14,LOC108442988 other upstream 1711172 12956670 ~ 12964349 (+)
LOC103029421 NA other upstream 1746994 12889358 ~ 12928527 (+)
G197665 NA other downstream 74882 14794420 ~ 14796728 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other downstream 1042385 15761923 ~ 15789854 (+)
ppp1r11 ppp1r11,LOC107694341 other downstream 1602404 16321942 ~ 16330240 (+)
atat1 atat1 other downstream 1625579 16345117 ~ 16359668 (+)
c23h5orf49 cunh5orf49,LOC103039620 other downstream 1669270 16388808 ~ 16393498 (+)

Expression


Co-expression Network