G197662


Basic Information

Item Value
gene id G197662
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 14785121 ~ 14785740 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU268373
gctctggaaaaaccaagataccactttaaaatgctgagttttttattttaccatattaaaaacTGGTAACTGAAgcagtctcttaatttttatatttctattttgtatatatctATCCAGTAACACACTACTTAGGGGACTACGGTCGATTTGGGACGCACCCAGGTCCTTTaccactgctgctgatgcaattTGTAATCGAGTTACAAACACGTGTTCAACCCACAGCATGTTCAGACTTTATTAAGATACATCATTACCtgtctttttaaagtaaataatacaaaagtaAAGTGTTTAAGGGCGCGGCAGTAAATTGCTTTAgcttttttacgtttttttatgCTTGAAGTAAAGAAACACACCAACTTACCTATCTTCTCATTAAACTCAGTATCAGTAAAGAACGTTACTGATCTGTCCACAAAATCATATCGAGATCTGAACCTGAAAATCTGAGATCATCTCCACTATAAATCAGAATGAGGAACAGCTAAAGGTAAACAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU268373 True 507 lncRNA 0.35 2 14785121 14785740

Neighbor

gene id symbol gene type direction distance location
sdhaf3 sdhaf3 coding upstream 420444 14350057 ~ 14364677 (+)
col28a1 NA coding upstream 445719 14301910 ~ 14339402 (+)
LOC111195557 NA coding upstream 796183 13987037 ~ 13988938 (+)
LOC103030231 NA coding upstream 880083 13902767 ~ 13905038 (+)
LOC103039331 si:dkeyp-92c9.3,LOC108273295,LOC107672858,LOC107702514,LOC106570358,LOC107738593,LOC108411155,LOC107731552,LOC107571466 coding upstream 991009 13670343 ~ 13794112 (+)
jarid2 jarid2 coding downstream 291804 15077544 ~ 15259664 (+)
mylip mylip,mylipa,LOC107754815,LOC107731572,LOC107694366 coding downstream 615183 15400923 ~ 15434466 (+)
LOC103027820 npr1,npr1a,LOC108435512,LOC107694365,LOC107677481,LOC107754786,LOC106588322 coding downstream 679752 15465492 ~ 15582858 (+)
ints3 ints3,LOC107754816 coding downstream 806703 15592443 ~ 15611187 (+)
LOC103028143 LOC108273188 coding downstream 829433 15615173 ~ 15632584 (+)
G197639 asns,LOC107672863,LOC107754811 non-coding upstream 11659 14771795 ~ 14773462 (+)
G197657 NA non-coding upstream 40105 14737355 ~ 14745016 (+)
G197646 LOC107731557,LOC107754811,LOC107702657,LOC107672863 non-coding upstream 65583 14675521 ~ 14719538 (+)
G197630 NA non-coding upstream 292571 14492059 ~ 14492550 (+)
G197617 NA non-coding upstream 338875 14409494 ~ 14446246 (+)
G197663 bloc1s4,LOC105910270,LOC108410562,LOC107731556,LOC107598233,LOC107672822,LOC108272578 non-coding downstream 4130 14789870 ~ 14791210 (+)
G197716 NA non-coding downstream 513872 15299612 ~ 15355237 (+)
G197747 NA non-coding downstream 602814 15388554 ~ 15393678 (+)
G197848 sacm1l,LOC108435519,LOC107595621 non-coding downstream 1035738 15821478 ~ 15842757 (+)
G197879 NA non-coding downstream 1359771 16145511 ~ 16146073 (+)
tac1 tac1 other upstream 316239 14466265 ~ 14468882 (+)
rpa3 NA other upstream 492053 14276791 ~ 14293068 (+)
G197334 LOC108441809 other upstream 1422463 13324386 ~ 13362658 (+)
s100a14 s100a14,LOC108442988 other upstream 1820772 12956670 ~ 12964349 (+)
LOC103029421 NA other upstream 1856594 12889358 ~ 12928527 (+)
G197665 NA other downstream 8680 14794420 ~ 14796728 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other downstream 976183 15761923 ~ 15789854 (+)
ppp1r11 ppp1r11,LOC107694341 other downstream 1536202 16321942 ~ 16330240 (+)
atat1 atat1 other downstream 1559377 16345117 ~ 16359668 (+)
c23h5orf49 cunh5orf49,LOC103039620 other downstream 1603068 16388808 ~ 16393498 (+)

Expression


Co-expression Network