G197747


Basic Information

Item Value
gene id G197747
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 15388554 ~ 15393678 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU268494
tatattgtggcggctctgggttgtgtgtgtggctgcctgtaggcatggttctgttctcctgtgtgcgaggatgacaggggtggggcatctcccttgggaggggttatgcagagagggtgggcaccactctggatctgccatctgggagacacacagatgggttggtggcctttgggctattttagctctgtgggtgatggttttagctctcctagtcttgttaaagactgtaagtgagtggcaagcctgttcaataaaggagctgttgagcattcagcatgagtctcacgggtcttccttcctcttccacgccacaatataat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU268494 True 323 lncRNA 0.52 2 15388554 15393678

Neighbor

gene id symbol gene type direction distance location
jarid2 jarid2 coding upstream 128890 15077544 ~ 15259664 (+)
sdhaf3 sdhaf3 coding upstream 1023877 14350057 ~ 14364677 (+)
col28a1 NA coding upstream 1049152 14301910 ~ 14339402 (+)
LOC111195557 NA coding upstream 1399616 13987037 ~ 13988938 (+)
LOC103030231 NA coding upstream 1483516 13902767 ~ 13905038 (+)
mylip mylip,mylipa,LOC107754815,LOC107731572,LOC107694366 coding downstream 7245 15400923 ~ 15434466 (+)
LOC103027820 npr1,npr1a,LOC108435512,LOC107694365,LOC107677481,LOC107754786,LOC106588322 coding downstream 71814 15465492 ~ 15582858 (+)
ints3 ints3,LOC107754816 coding downstream 198765 15592443 ~ 15611187 (+)
LOC103028143 LOC108273188 coding downstream 221495 15615173 ~ 15632584 (+)
LOC103028648 LOC108435516,LOC108273190 coding downstream 240286 15633964 ~ 15645496 (+)
G197716 NA non-coding upstream 33317 15299612 ~ 15355237 (+)
G197663 bloc1s4,LOC105910270,LOC108410562,LOC107731556,LOC107598233,LOC107672822,LOC108272578 non-coding upstream 597344 14789870 ~ 14791210 (+)
G197662 NA non-coding upstream 602814 14785121 ~ 14785740 (+)
G197639 asns,LOC107672863,LOC107754811 non-coding upstream 615092 14771795 ~ 14773462 (+)
G197657 NA non-coding upstream 643538 14737355 ~ 14745016 (+)
G197848 sacm1l,LOC108435519,LOC107595621 non-coding downstream 427800 15821478 ~ 15842757 (+)
G197879 NA non-coding downstream 751833 16145511 ~ 16146073 (+)
G197881 NA non-coding downstream 752807 16146485 ~ 16148110 (+)
G197880 NA non-coding downstream 795234 16188912 ~ 16199486 (+)
G197903 znrd1,LOC107694346,LOC107584303,LOC107754832,LOC107677479,LOC107595594 non-coding downstream 832889 16226567 ~ 16228218 (+)
G197665 NA other upstream 591826 14794420 ~ 14796728 (+)
tac1 tac1 other upstream 919672 14466265 ~ 14468882 (+)
rpa3 NA other upstream 1095486 14276791 ~ 14293068 (+)
G197334 LOC108441809 other upstream 2025896 13324386 ~ 13362658 (+)
s100a14 s100a14,LOC108442988 other upstream 2424205 12956670 ~ 12964349 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other downstream 368245 15761923 ~ 15789854 (+)
ppp1r11 ppp1r11,LOC107694341 other downstream 928264 16321942 ~ 16330240 (+)
atat1 atat1 other downstream 951439 16345117 ~ 16359668 (+)
c23h5orf49 cunh5orf49,LOC103039620 other downstream 995130 16388808 ~ 16393498 (+)
LOC111195522 LOC107679107,LOC107679108 other downstream 1030939 16424617 ~ 16430534 (+)

Expression


Co-expression Network