G197892


Basic Information

Item Value
gene id G197892
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 16240590 ~ 16314252 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU268728
AAATTCAAACTTAAGACTTAAGTCTTAGCCCAATATCTTCAATCATAACTGGCAATTCACAACTAATAGAAGACGGCATACTGTCATATCTTCAGTCTTTATCTGTGGGTTTAGTAGACTTTAGTAAAGGTTAGATACCACCTCCAAGCAGCTCAAGCCAGAAAATTATTTTGTCCatgtttttattactgtttagtactgttctgtatctctcagcttgtccagaaatgcatgtgtaaagcctGTCCTCTAGAGGTCAGCACTAATTCCACTTCCTGAGTCTAGGGGGAGGCCACTACTATTTACACTAACTAGTCTAAGGGCAATAAGCATTGCTGAGTTAATTTTTTAGCCCAGTGTTTTGCTATTACCACCTTAGCATAACACTAAAAAGTGTTGTTAGCTGGTCAGACTGATGAGACTATATtgataagcaaaaaaaaaaaaacactagaacaGAGTCTGGCCCCAGGTTTGTACAGTACAGTCAGTTCTGCAGACTACAGGCGATGCAGCTATAATTGAATGACAGGTAAAAGAGACGGGGACCTGTTTTCCACACAGCCCACCTCAAAATCCTTCCCTCCCTTGGCTATACTGATCTCGGTCATGTTCAATCACAGAGTGAACACTGATCTGCGGTCAGTGCGCCTTGGGATAAGGAGGATATCTGATTTGAGATGAGGCTTTAGACAGAAAGCGCCGTGCTCCTGTCAGGACAAATAGAGTATTTCTGACAGGCGGTGAGTCGGCTGATAAAGCACGGCTTACACTGCGAGGCTCCTGCAGGTAAGTGGAGCGCTGCGCATTCAACGATGAAGCTGAAGACTGATGGCGGGAAGTGTTTGCACTTTCATTAGTGTCCGTGTCAGTCCACATCTTGCCCTCCGCTAAATTGCCCGATTACTCAAAGCATTGTTCCTCGTTGAATGCGCACTCTTGAATTGTTGAGTGAGTGTTGGCGTGGGTGCAGTGATAATATTTTCaggttttatctttatttttataaattgcTATGTAGAAAGTCAATGGCTGTTTGTTGTCGTGTATCAAATTGGGCGGTTTTATGAACTTGAACAAAGAACAGGAGCCATCCAAATGAGTAATCTTAAGCAAATTTCATTGCAAATATGCAGATGAATTAGCCTGAAAGGTGATTAAATTGTGAAAAGTAAACAGAATTTATTGCACTTCTTTATTACTTAGCTTAGACCAATGACTGTACATAGGCATATGTAGTAGTATTTATAACACCATGTTTTTTGCACTATGAGGcgcaattaaaatcctttaattttcccaaaaatcatcagtgcgccttataatccggtgcgaaTTGtgtatgaattaaaaaaattctctgtatcggttagccgctaatgctaatgctccagctttagtggaaatcagtaaatctaagcttattgtaaataaacagaagtgctttactcacccaaataaatcattttaaggagagaaatctgtgtagattaacatccagtgctcatttggcTTGTCTGACTTGtctgaggtgtttttttttttgtttctttttaaagaatttaatgaCTTAAAAGCTTAGCTTTAAAGGTCCTactgaatttagaaggaaaacatggtggcacccctgttccttactagttactactagtgtcacttaaaatgcgccctataatccagtgcacattatatatgaaaatagaccagaaaatagacgttcactgatagtgcaccttataagtGCCAAAAATACGGTAGTTAGATTCCTCTGGTCATAACGATACAcccattattcattttatcagcTTTGTTGAGCATATAGAAGCACTTTGTACTTACAGACTggaattacagactgtagtctgtttctctgcatacttatTTATTTGGGCGAcggatcattctcagcactgcagtgacactgagtaGCATGgtgctggtgtgtttgtgtgtgtgttgcgcttGTATGaggtggatcagacacagctgtgctgctggagtttttaaacacctcagtgtcacatGGAGGGCTgaaggatgaccaacacaaactatagagctacagattcagagcttctgtctcagACTCTACATCTaaaaggtggagcagctaaatAGAAGTAATGTGTCTAATATGGAGGAgaatgagtgtatgagtgtttaaaaactccagcagcactgctgctgtattaTTGTCACCTGCAGTGCTAAagatgacccaccacccaaataaaacaGCTGCTCTTTGGTGGTCTATCCAGTTCgagaacagagtgaaaggaggataataaagtatgaagAGGAACAGAAGAACTACAGTCTGCAATCATAGAACTATAGAATGGTCATATACTTCCAATTGAGTtgaaaaaatggataatgggtgtagaaataAGAATATGTTTGATCTGTGTTTATAGTCATTGGTTTAGATTGATGCAGTAGTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU268728 True 2448 lncRNA 0.40 2 16240590 16314252

Neighbor

gene id symbol gene type direction distance location
LOC103032568 NA coding upstream 380926 15857116 ~ 15859664 (+)
csnk2b csnk2b,LOC102207154,LOC106594067,LOC106573472,LOC101175345,LOC100710962 coding upstream 440357 15792769 ~ 15800233 (+)
LOC103030882 LOC103030882,LOC108411940,LOC108272741,LOC108411932 coding upstream 487650 15748550 ~ 15752940 (+)
neu1 neu1,LOC108411932,LOC108272740,LOC106570060,LOC106588520 coding upstream 493545 15736537 ~ 15747045 (+)
prrt1 prrt1,LOC107677474,LOC107694357,LOC107595589,LOC107584308,LOC107711307 coding upstream 531139 15699725 ~ 15709451 (+)
nsun2 nsun2,LOC107694333,LOC107691499,LOC107711338 coding downstream 285035 16599287 ~ 16633452 (+)
med10 med10,LOC107595625,LOC107691542,LOC106588698 coding downstream 381344 16695596 ~ 16701247 (+)
adgrb2 adgrb2,LOC107722142 coding downstream 980639 17294891 ~ 17829877 (+)
col16a1 col16a1 coding downstream 1620441 17934693 ~ 18062867 (+)
smap2 smap2 coding downstream 1789564 18103816 ~ 18127521 (+)
G197903 znrd1,LOC107694346,LOC107584303,LOC107754832,LOC107677479,LOC107595594 non-coding upstream 12372 16226567 ~ 16228218 (+)
G197880 NA non-coding upstream 41104 16188912 ~ 16199486 (+)
G197881 NA non-coding upstream 92480 16146485 ~ 16148110 (+)
G197879 NA non-coding upstream 94517 16145511 ~ 16146073 (+)
G197848 sacm1l,LOC108435519,LOC107595621 non-coding upstream 397833 15821478 ~ 15842757 (+)
G197924 NA non-coding downstream 25438 16339690 ~ 16341355 (+)
G197925 NA non-coding downstream 29412 16343664 ~ 16343913 (+)
G198043 NA non-coding downstream 136121 16450373 ~ 16465970 (+)
G198045 NA non-coding downstream 170777 16485029 ~ 16489049 (+)
G198050 NA non-coding downstream 210417 16524669 ~ 16525372 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other upstream 450736 15761923 ~ 15789854 (+)
G197665 NA other upstream 1443862 14794420 ~ 14796728 (+)
tac1 tac1 other upstream 1771708 14466265 ~ 14468882 (+)
rpa3 NA other upstream 1947522 14276791 ~ 14293068 (+)
G197334 LOC108441809 other upstream 2877932 13324386 ~ 13362658 (+)
ppp1r11 ppp1r11,LOC107694341 other downstream 7690 16321942 ~ 16330240 (+)
atat1 atat1 other downstream 30865 16345117 ~ 16359668 (+)
c23h5orf49 cunh5orf49,LOC103039620 other downstream 74556 16388808 ~ 16393498 (+)
LOC111195522 LOC107679107,LOC107679108 other downstream 110365 16424617 ~ 16430534 (+)
G198344 NA other downstream 2070375 18384627 ~ 18385072 (+)

Expression


Co-expression Network