ppp1r11 (ppp1r11,LOC107694341)


Basic Information

Item Value
gene id ppp1r11
gene name ppp1r11,LOC107694341
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 16321942 ~ 16330240 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU268755
TGAATTGTTTCCTCCGGCCTGTGCTGAGCTCCGGGAGCAGCGTCGCCCCACAGCCGCGCCTCTGCCCGCCGCTCCAGGTCTCTGtgtctgctgtttttttctatgtGTGTTTAGACTCTAAACACAGCTCGGCCAGTACACAGCGTGTGGGAGGTCGGTGTGTTTTACAGGAGGAGCTAAGCTAGCTTCGTGAGCCACCGTAAGCATGGCGGAGGTCCCTGGTCCGTCCAGCGAGACGATAACGGAGACGGTGCCGACGGCCGCGCCTCCTCCGCCGCCTCAGCAGGAGGGAAGAAGTTTGACCATCAAGCTTCGAAAAAGGAAGACTGAGAAAAAGGTGGAGTGGTCCAGTGACACGGTGGACAACGAGCACTTGGGAAGGAGGTCCTCAAAGTGTTGTTGTGTTTACGAGAAGCCTCGGCAGTTTGGAGAGTCTTCCacagagagtgagggagaggatGAAGAAGGCTGTGGCAGTGCACACTGCATTCTGGGACACGGGAGAGGTCATGGACAGAGAGGGAGCGGTGGGGCCACGGCGCCCCCTGGCTCCGGGGGTACAAACCCTCACTAATCACAAATGAAAGGGAAGTTATTTGGTGGCAAAAAAAGAGTAAAGGGCAGGGTGGACAACACATTCATTATTTCACATCCAACTACTCACATTGAAACCAGTCACTGCATTGCTGTGTTCCAAATAGCAGTTTGATGAAGAGCGGATGCTTGTAGGTAAATGCAGGatgacacccccccccccccccttttttttttttcccttctcctttttttttccagatgtcTTTTAGCAATGTGAATAGTGGGAAGACTAGACAGATCTTACCATCTGAATGCTGTGGGAATTTTGAATTCGTTGTACATAGGAAAGtggattttacttttttttttttgtaaagtgtttatttatttgtcttaaACATTCACATCAGATCATACCAGTTCAGTCTCCTTCCactgtttcttcttcttttaatgCCAGTAAAGCAGAACCAGGAACCCTAAATGGGGCTTAAGCAGTGGATGTGTAGTCTAGTGGCAAATTGCAGTAAATATCTTACAATGTCTGGGCACCAAACTGGCGCCTGTAGTTTAGAACATAAGGTTCTGAGAGTTGGACTGCACAATTTGGAGCATATTGTACAATATTGCAGATATGGTGCATTTGCAGTATGTCTTGTCACTAGTAAAAATACCTCCATTAAAGATTGGTCTCAGTGGTGTAACTACCCGAGGGGACAGGCAGGGCAGTTACACCTGGGTGCAGTGGTTCAAGTACAACAGATCCCCCTAAAATCATTATTGGGTTTTGTATACAGACActgatacatttatattttctttcatAAATTGTAAAACAATCTGTGTCATTCTTGTCTGtatttacactgactttttaataagtaa
>XM_007231718.3
TCGACGGAACACCGGCGGATATATTATAGTGAGCACAGGGAGGGAAGGGTCGGTCCGTCTGTGAATTGTTTCCTCCGGCCTGTGCTGAGCTCCGGGAGCAGCGTCGCCCCACAGCCGCGCCTCTGCCCGCCGCTCCAGGTCTCTGtgtctgctgtttttttctatgtGTGTTTAGACTCTAAACACAGCTCGGCCAGTACACAGCGTGTGGGAGGTCGGTGTGTTTTACAGGAGGAGCTAAGCTAGCTTCGTGAGCCACCGTAAGCATGGCGGAGGTCCCTGGTCCGTCCAGCGAGACGATAACGGAGACGGTGCCGACGGCCGCGCCTCCTCCGCCGCCTCAGCAGGAGGGAAGAAGTTTGACCATCAAGCTTCGAAAAAGGAAGACTGAGAAAAAGGTGGAGTGGTCCAGTGACACGGTGGACAACGAGCACTTGGGAAGGAGGTCCTCAAAGTGTTGTTGTGTTTACGAGAAGCCTCGGCAGTTTGGAGAGTCTTCCacagagagtgagggagaggatGAAGAAGGCTGTGGCAGTGCACACTGCATTCTGGGACACGGGAGAGGTCATGGACAGAGAGGGAGCGGTGGGGCCACGGCGCCCCCTGGCTCCGGGGGTACAAACCCTCACTAATCACAAATGAAAGGGAAGTTATTTGGTGGCAAAAAAAGAGTAAAGGGCAGGGTGGACAACACATTCATTATTTCACATCCAACTACTCACATTGAAACCAGTCACTGCATTGCTGTGTTCCAAATAGCAGTTTGATGAAGAGCGGATGCTTGTAGGTAAATGCAGGatgacacccccccccccccccttttttttttttcccttctcctttttttttccagatgtcTTTTAGCAATGTGAATAGTGGGAAGACTAGACAGATCTTACCATCTGAATGCTGTGGGAATTTTGAATTCGTTGTACATAGGAAAGtggattttacttttttttttttgtaaagtgtttatttatttgtcttaaACATTCACATCAGATCATACCAGTTCAGTCTCCTTCCactgtttcttcttcttttaatgCCAGTAAAGCAGAACCAGGAACCCTAAATGGGGCTTAAGCAGTGGATGTGTAGTCTAGTGGCAAATTGCAGTAAATATCTTACAATGTCTGGGCACCAAACTGGCGCCTGTAGTTTAGAACATAAGGTTCTGAGAGTTGGACTGCACAATTTGGAGCATATTGTACAATATTGCAGATATGGTGCATTTGCAGTATGTCTTGTCACTAGTAAAAATACCTCCATTAAAGATTGGTCTCAGTGGTGTAACTACCCGAGGGGACAGGCAGGGCAGTTACACCTGGGTGCAGTGGTTCAAGTACAACAGATCCCCCTAAAATCATTATTGGGTTTTGTATACAGACActgatacatttatattttctttcatAAATTGTAAAACAATCTGTGTCATTCTTGTCTGtatttacactgactttttaataagtaaaataaatcttaattatttttagatttgaaaaataaataaattaattaataacatgcATGCATAATCCCTCCCACTTATTTGACAACTCAATTAATCTGTCAAAAATTATTTACTTcaaataaggaataaaaaaataaatataattgctaTGTCACAGAAGTTCTCAGAAATCTCTGTAGCCGATGAATATATGATGCGTAATTAGAATGAATTTTAAAGGTAAACATTAGATATCTCTTCTTTGAGACCTAATAGCAAGTTAAGTTAGAAATGTAAGTAATTAATTTTCATATTGGGATAAACAGaatattttgttgcacagaGACCCGTAAGATCCTACTTACGCCACTGATTGGTCTGCCTTATTGAAGCCAAAATGATTTCTCATTATTGGACAATATGAGCACTCATAATTCATCAGAACATCAATGGAAATTCATCGGAATAatctgtgattggtcagggtGCAAAGGGCTTATTTGCATATTACTGCCTTTTGCAATGTCACGGTCATACAGGCCAAGATTGCAATAACGAACAGTGTATTCTGCAGCCATAATGACTAATCCAAAAACCTTTGGGGTTGTATATCTCAAAGTACTAGGAAAGGAAACTTTAAGAAAGTAACACAATGAGACCTGTTCAGAATAGTATTATTGTCTGTATAGACACAAATAAGAGAATTCCTCAAGCTTATGATTAATGCagtgctttttctttctttcttgttgcGATGATTCAAGTTTATGgatttttactgtgtgtgtaaatgaaatgtgTTTTCACGCTGCGCAAAGTTAAATGAAGATATTGGGAGACGTTCACTCATCCACAGTGTATAATTTTCTCCATCCTTCATCTCGTTTACTAGTAAAACTACTGATTCTGTTCTTTGACAATCAGAGTATGATGAGGCAAAAGATGCGTGTACATACAAAAAACAGGAAGCTTCACCATGGAAACTGTTTCAGGAGAAGAAACAGAGCTAATGGTTTTGATTAAAATTGACAAACATCAAAACATCCTGTCTCCTTTATATCTGGTAGTGTAAAGGTAACAAAGACCatgaaaaacaatacacaaatTAGAGGAATGATGTACTATACAATTATGATGTCAGTGtgcaaatacaaaaacatttaatgttactttaaaaagtacaaGTGTGCTGGATACGAAGAAATTGCTTTTAAAACCCACTTATGCAGTTGGACATTTACCAATATTTTATCTGAGATTTGTTTATCTTATGGTTCTAAGGGTAAATTTTCTGTTAGGACTTTTCTCCAtaattttttacgtttttagAAAGGTAATGGTGAATTGTGgtaaattacacattaatacCAGTAGTATCTAAAATTGACCTTCAGAATTCTTCAGTGTGTCTTAAACTGTTTCTATTTAATGGTTAGTTACCCATACAATAACTTTCACATATTTCTCTCACTGGTTTCTACAGTGGCTTCTTCAATAATTTTTGAGTCAACACACTGATTATAATACCgataaacactgaaatattcctTTATGGTTGAGTCCCAGTCACGACTATAGTGTTAAAACTCTATCTATTCATTTTCACATTGATATTCACTCTTGTGTTGTAAGCTCCACACACCAGAGCCACATCTCCACCCTTATTGGTGCATGCAGTGAGGAAAATCAAAACAGTGGAATGTGAAGTACCCATGTAACACCTATGGTATTACATAAGGCCCCCAGTGAGTGTTTTTATGGTGTAAAAATGAGAGAATATGCTGGTTATGAATCTGTGTTTTAGTCGAGCATTCCACTCAGAGCTCTACAGTTCAGGTTGAGTTTTAAAGCAGGTTAGTGATGGAGTTGGGGGCTCAGCAAAGtttgaacaacaaaaaaaagcttcctCTGAGATTCTTACAACTGTTTACAGGTCTTTCCTCTGCAGAATTTTGTAACACCAGGATGTATGCCACCATTTTCTACTAAGTGATCAGACAAGTATTGAGGCTTCCTGTAATGTGAATGCACTTGTATGTACATAGCAAAAGTCGTAAACAGAGCTGATTTAACATGAATAAAGAGATCAAGTGGATACCATCA

Function

symbol description
ppp1r11 Predicted to enable protein phosphatase 1 binding activity; protein serine/threonine phosphatase inhibitor activity; and ubiquitin protein ligase activity. Predicted to be involved in defense response to Gram-positive bacterium; negative regulation of macromolecule metabolic process; and ubiquitin-dependent protein catabolic process. Predicted to be active in nucleus. Orthologous to human PPP1R11 (protein phosphatase 1 regulatory inhibitor subunit 11).

NR:

description
transposase

GO:

id name namespace
GO:0004864 protein phosphatase inhibitor activity molecular_function

KEGG:

id description
K17553 PPP1R11; protein phosphatase 1 regulatory subunit 11

RNA

RNA id representative length rna type GC content exon number start site end site
TU268755 False 1422 TUCP 0.47 3 16322003 16328158
XM_007231718.3 True 3565 mRNA 0.39 3 16321942 16330240

Neighbor

gene id symbol gene type direction distance location
LOC103042292 ddx39b,LOC103042292,LOC107694345,LOC107595593,LOC107584302,LOC107754831,LOC108272881 coding upstream 67310 16229507 ~ 16254632 (+)
LOC103032568 NA coding upstream 462278 15857116 ~ 15859664 (+)
csnk2b csnk2b,LOC102207154,LOC106594067,LOC106573472,LOC101175345,LOC100710962 coding upstream 521709 15792769 ~ 15800233 (+)
LOC103030882 LOC103030882,LOC108411940,LOC108272741,LOC108411932 coding upstream 569002 15748550 ~ 15752940 (+)
neu1 neu1,LOC108411932,LOC108272740,LOC106570060,LOC106588520 coding upstream 574897 15736537 ~ 15747045 (+)
nsun2 nsun2,LOC107694333,LOC107691499,LOC107711338 coding downstream 269047 16599287 ~ 16633452 (+)
med10 med10,LOC107595625,LOC107691542,LOC106588698 coding downstream 365356 16695596 ~ 16701247 (+)
adgrb2 adgrb2,LOC107722142 coding downstream 964651 17294891 ~ 17829877 (+)
col16a1 col16a1 coding downstream 1604453 17934693 ~ 18062867 (+)
smap2 smap2 coding downstream 1773576 18103816 ~ 18127521 (+)
G197892 NA non-coding upstream 7690 16240590 ~ 16314252 (+)
G197903 znrd1,LOC107694346,LOC107584303,LOC107754832,LOC107677479,LOC107595594 non-coding upstream 93724 16226567 ~ 16228218 (+)
G197880 NA non-coding upstream 122456 16188912 ~ 16199486 (+)
G197881 NA non-coding upstream 173832 16146485 ~ 16148110 (+)
G197879 NA non-coding upstream 175869 16145511 ~ 16146073 (+)
G197924 NA non-coding downstream 9450 16339690 ~ 16341355 (+)
G197925 NA non-coding downstream 13424 16343664 ~ 16343913 (+)
G198043 NA non-coding downstream 120133 16450373 ~ 16465970 (+)
G198045 NA non-coding downstream 154789 16485029 ~ 16489049 (+)
G198050 NA non-coding downstream 194429 16524669 ~ 16525372 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other upstream 532088 15761923 ~ 15789854 (+)
G197665 NA other upstream 1525214 14794420 ~ 14796728 (+)
tac1 tac1 other upstream 1853060 14466265 ~ 14468882 (+)
rpa3 NA other upstream 2028874 14276791 ~ 14293068 (+)
G197334 LOC108441809 other upstream 2959284 13324386 ~ 13362658 (+)
atat1 atat1 other downstream 14877 16345117 ~ 16359668 (+)
c23h5orf49 cunh5orf49,LOC103039620 other downstream 58568 16388808 ~ 16393498 (+)
LOC111195522 LOC107679107,LOC107679108 other downstream 94377 16424617 ~ 16430534 (+)
G198344 NA other downstream 2054387 18384627 ~ 18385072 (+)
G198397 NA other downstream 2528292 18858532 ~ 18863366 (+)

Expression


Co-expression Network