G197925


Basic Information

Item Value
gene id G197925
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 16343664 ~ 16343913 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU268767
AAACGGAAGCTCGGtgtacatttaatttatgattaaagCTCTTCGGgcgttttctgtgttttttgtatgttaaGCTGGAGCGGTGGAGCTGCTTTATTAAACGTGTTCGATGCTTTAGCTCCGTTAACGTGGACCTGGGTGAACTGCTGCAGCCTGAGGAAATCCTATAAGCGCCTTGTGTTGTGGCGCTAATCCTGAATCGCGCTGTTTGAAGGGAGtgacagtagcagcagcagcagcagcagcagca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU268767 True 250 lncRNA 0.48 1 16343664 16343913

Neighbor

gene id symbol gene type direction distance location
LOC103042292 ddx39b,LOC103042292,LOC107694345,LOC107595593,LOC107584302,LOC107754831,LOC108272881 coding upstream 89032 16229507 ~ 16254632 (+)
LOC103032568 NA coding upstream 484000 15857116 ~ 15859664 (+)
csnk2b csnk2b,LOC102207154,LOC106594067,LOC106573472,LOC101175345,LOC100710962 coding upstream 543431 15792769 ~ 15800233 (+)
LOC103030882 LOC103030882,LOC108411940,LOC108272741,LOC108411932 coding upstream 590724 15748550 ~ 15752940 (+)
neu1 neu1,LOC108411932,LOC108272740,LOC106570060,LOC106588520 coding upstream 596619 15736537 ~ 15747045 (+)
nsun2 nsun2,LOC107694333,LOC107691499,LOC107711338 coding downstream 255374 16599287 ~ 16633452 (+)
med10 med10,LOC107595625,LOC107691542,LOC106588698 coding downstream 351683 16695596 ~ 16701247 (+)
adgrb2 adgrb2,LOC107722142 coding downstream 950978 17294891 ~ 17829877 (+)
col16a1 col16a1 coding downstream 1590780 17934693 ~ 18062867 (+)
smap2 smap2 coding downstream 1759903 18103816 ~ 18127521 (+)
G197924 NA non-coding upstream 2309 16339690 ~ 16341355 (+)
G197892 NA non-coding upstream 29412 16240590 ~ 16314252 (+)
G197903 znrd1,LOC107694346,LOC107584303,LOC107754832,LOC107677479,LOC107595594 non-coding upstream 115446 16226567 ~ 16228218 (+)
G197880 NA non-coding upstream 144178 16188912 ~ 16199486 (+)
G197881 NA non-coding upstream 195554 16146485 ~ 16148110 (+)
G198043 NA non-coding downstream 106460 16450373 ~ 16465970 (+)
G198045 NA non-coding downstream 141116 16485029 ~ 16489049 (+)
G198050 NA non-coding downstream 180756 16524669 ~ 16525372 (+)
G198051 NA non-coding downstream 181914 16525827 ~ 16526640 (+)
G198053 NA non-coding downstream 203986 16547899 ~ 16565823 (+)
ppp1r11 ppp1r11,LOC107694341 other upstream 13424 16321942 ~ 16330240 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other upstream 553810 15761923 ~ 15789854 (+)
G197665 NA other upstream 1546936 14794420 ~ 14796728 (+)
tac1 tac1 other upstream 1874782 14466265 ~ 14468882 (+)
rpa3 NA other upstream 2050596 14276791 ~ 14293068 (+)
atat1 atat1 other downstream 1204 16345117 ~ 16359668 (+)
c23h5orf49 cunh5orf49,LOC103039620 other downstream 44895 16388808 ~ 16393498 (+)
LOC111195522 LOC107679107,LOC107679108 other downstream 80704 16424617 ~ 16430534 (+)
G198344 NA other downstream 2040714 18384627 ~ 18385072 (+)
G198397 NA other downstream 2514619 18858532 ~ 18863366 (+)

Expression


Co-expression Network