G198163


Basic Information

Item Value
gene id G198163
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 17146980 ~ 17147227 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU269080
gagccacggtatccagggtaatgtcagcataccaccaagaaggacaaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgttcgggtgctaacccggattgtatccaaaacacataaaaccacggctgcccaaatcacgacagaattcaatgtgcacctcaactctcctgtttccaccagaactgtccgtcgggacaataaattattgttgtctaaaaccagg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU269080 True 248 lncRNA 0.47 1 17146980 17147227

Neighbor

gene id symbol gene type direction distance location
med10 med10,LOC107595625,LOC107691542,LOC106588698 coding upstream 445733 16695596 ~ 16701247 (+)
nsun2 nsun2,LOC107694333,LOC107691499,LOC107711338 coding upstream 513528 16599287 ~ 16633452 (+)
LOC103042292 ddx39b,LOC103042292,LOC107694345,LOC107595593,LOC107584302,LOC107754831,LOC108272881 coding upstream 892348 16229507 ~ 16254632 (+)
LOC103032568 NA coding upstream 1287316 15857116 ~ 15859664 (+)
csnk2b csnk2b,LOC102207154,LOC106594067,LOC106573472,LOC101175345,LOC100710962 coding upstream 1346747 15792769 ~ 15800233 (+)
adgrb2 adgrb2,LOC107722142 coding downstream 147664 17294891 ~ 17829877 (+)
col16a1 col16a1 coding downstream 787466 17934693 ~ 18062867 (+)
smap2 smap2 coding downstream 956589 18103816 ~ 18127521 (+)
LOC103029482 LOC103029482 coding downstream 1703300 18850527 ~ 18851285 (+)
pip4p2 tmem55a,LOC107724355,LOC107696196,LOC107702130 coding downstream 1759359 18906586 ~ 18924321 (+)
G198092 NA non-coding upstream 469196 16673080 ~ 16677784 (+)
G198053 NA non-coding upstream 581157 16547899 ~ 16565823 (+)
G198051 NA non-coding upstream 620340 16525827 ~ 16526640 (+)
G198050 NA non-coding upstream 621608 16524669 ~ 16525372 (+)
G198045 NA non-coding upstream 657931 16485029 ~ 16489049 (+)
G198173 NA non-coding downstream 86649 17233876 ~ 17241559 (+)
G198172 NA non-coding downstream 111973 17259200 ~ 17264139 (+)
G198283 NA non-coding downstream 969487 18116714 ~ 18117099 (+)
G198304 NA non-coding downstream 1012169 18159396 ~ 18159608 (+)
G198337 NA non-coding downstream 1172884 18320111 ~ 18320570 (+)
LOC111195522 LOC107679107,LOC107679108 other upstream 716446 16424617 ~ 16430534 (+)
c23h5orf49 cunh5orf49,LOC103039620 other upstream 753482 16388808 ~ 16393498 (+)
atat1 atat1 other upstream 787312 16345117 ~ 16359668 (+)
ppp1r11 ppp1r11,LOC107694341 other upstream 816740 16321942 ~ 16330240 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other upstream 1357126 15761923 ~ 15789854 (+)
G198344 NA other downstream 1237400 18384627 ~ 18385072 (+)
G198397 NA other downstream 1711305 18858532 ~ 18863366 (+)
G198400 NA other downstream 1740242 18887469 ~ 18891614 (+)
ppp1r10 ppp1r10,LOC107745712,LOC107687078,LOC107691520,LOC107709274 other downstream 1957180 19104407 ~ 19116302 (+)
LOC103045134 khdrbs1,LOC103045134,LOC107691518,LOC101482948,LOC102791371,LOC107709277,LOC107584277 other downstream 2019119 19166346 ~ 19182478 (+)

Expression


Co-expression Network