G198304


Basic Information

Item Value
gene id G198304
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 18159396 ~ 18159608 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU269260
gttgtgtaaactgatatttttcaaattgatgtttcattacatgatgtctcttaatattaaactccttaattacggcaacttttagactctttggcccgtttttctgcactacaactgcgcaccctctccgcttttagactctttggcccgtttttctgcactacaactgcgcaccctctccgcttttagactctttggcccgtttttctgcgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU269260 True 213 lncRNA 0.42 1 18159396 18159608

Neighbor

gene id symbol gene type direction distance location
smap2 smap2 coding upstream 31875 18103816 ~ 18127521 (+)
col16a1 col16a1 coding upstream 96529 17934693 ~ 18062867 (+)
adgrb2 adgrb2,LOC107722142 coding upstream 329519 17294891 ~ 17829877 (+)
med10 med10,LOC107595625,LOC107691542,LOC106588698 coding upstream 1458149 16695596 ~ 16701247 (+)
nsun2 nsun2,LOC107694333,LOC107691499,LOC107711338 coding upstream 1525944 16599287 ~ 16633452 (+)
LOC103029482 LOC103029482 coding downstream 690919 18850527 ~ 18851285 (+)
pip4p2 tmem55a,LOC107724355,LOC107696196,LOC107702130 coding downstream 746978 18906586 ~ 18924321 (+)
tmem64 tmem64,LOC107696193,LOC107584320 coding downstream 839766 18999374 ~ 19011467 (+)
bag6 bag6,bag6l coding downstream 888332 19047940 ~ 19067708 (+)
abcf1 abcf1,LOC107745711 coding downstream 919477 19079085 ~ 19100818 (+)
G198283 NA non-coding upstream 42297 18116714 ~ 18117099 (+)
G198172 NA non-coding upstream 895257 17259200 ~ 17264139 (+)
G198173 NA non-coding upstream 917837 17233876 ~ 17241559 (+)
G198163 NA non-coding upstream 1012169 17146980 ~ 17147227 (+)
G198092 NA non-coding upstream 1481612 16673080 ~ 16677784 (+)
G198337 NA non-coding downstream 160503 18320111 ~ 18320570 (+)
G198349 NA non-coding downstream 256192 18415800 ~ 18421483 (+)
G198350 NA non-coding downstream 256494 18416102 ~ 18416635 (+)
G198356 LOC108410782,LOC107698976,LOC107670023,LOC107555956,LOC107722163 non-coding downstream 334009 18493617 ~ 18536671 (+)
G198362 NA non-coding downstream 415620 18575228 ~ 18578290 (+)
LOC111195522 LOC107679107,LOC107679108 other upstream 1728862 16424617 ~ 16430534 (+)
c23h5orf49 cunh5orf49,LOC103039620 other upstream 1765898 16388808 ~ 16393498 (+)
atat1 atat1 other upstream 1799728 16345117 ~ 16359668 (+)
ppp1r11 ppp1r11,LOC107694341 other upstream 1829156 16321942 ~ 16330240 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other upstream 2369542 15761923 ~ 15789854 (+)
G198344 NA other downstream 225019 18384627 ~ 18385072 (+)
G198397 NA other downstream 698924 18858532 ~ 18863366 (+)
G198400 NA other downstream 727861 18887469 ~ 18891614 (+)
ppp1r10 ppp1r10,LOC107745712,LOC107687078,LOC107691520,LOC107709274 other downstream 944799 19104407 ~ 19116302 (+)
LOC103045134 khdrbs1,LOC103045134,LOC107691518,LOC101482948,LOC102791371,LOC107709277,LOC107584277 other downstream 1006738 19166346 ~ 19182478 (+)

Expression


Co-expression Network