G198344


Basic Information

Item Value
gene id G198344
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 18384627 ~ 18385072 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU269304
GTATACGAAACGATGCCAACTACATCTAGAATACGAACTCCTAATGACTGATCGCATAGTAAGGCAGTTGAGACAGACTAAACAACGTTTTTTTGAGCAAGGTGACAAAGCTGGTAGACTATTGGCCCAACAAGCCCGTGCCACCTGTGCCTCTAGATTTATACCCAGGATCAAATTGCCCTCTGGCGACCTTACCCTAGACccctttaaaattaataaaacatttttagattattattCAGAGCTCTATACTTCAGAACACTCCTCTGACACTCCATCCTATCTGCATATGCCTGAATCATTGACCTACCCCAAGATCAGCACAGATATTGCCAAGGACTTAGGTCAACCTATTTCTCCTTCTGAGGTCCAAAATGCTATTGATTCACTAAAAAATGGTAAATCCCCGGGACCAGACGGCTTTACAGCCGAATTTTACAAAACAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU269304 True 446 TUCP 0.42 1 18384627 18385072

Neighbor

gene id symbol gene type direction distance location
smap2 smap2 coding upstream 257106 18103816 ~ 18127521 (+)
col16a1 col16a1 coding upstream 321760 17934693 ~ 18062867 (+)
adgrb2 adgrb2,LOC107722142 coding upstream 554750 17294891 ~ 17829877 (+)
med10 med10,LOC107595625,LOC107691542,LOC106588698 coding upstream 1683380 16695596 ~ 16701247 (+)
nsun2 nsun2,LOC107694333,LOC107691499,LOC107711338 coding upstream 1751175 16599287 ~ 16633452 (+)
LOC103029482 LOC103029482 coding downstream 465455 18850527 ~ 18851285 (+)
pip4p2 tmem55a,LOC107724355,LOC107696196,LOC107702130 coding downstream 521514 18906586 ~ 18924321 (+)
tmem64 tmem64,LOC107696193,LOC107584320 coding downstream 614302 18999374 ~ 19011467 (+)
bag6 bag6,bag6l coding downstream 662868 19047940 ~ 19067708 (+)
abcf1 abcf1,LOC107745711 coding downstream 694013 19079085 ~ 19100818 (+)
G198337 NA non-coding upstream 64057 18320111 ~ 18320570 (+)
G198304 NA non-coding upstream 225019 18159396 ~ 18159608 (+)
G198283 NA non-coding upstream 267528 18116714 ~ 18117099 (+)
G198172 NA non-coding upstream 1120488 17259200 ~ 17264139 (+)
G198173 NA non-coding upstream 1143068 17233876 ~ 17241559 (+)
G198349 NA non-coding downstream 30728 18415800 ~ 18421483 (+)
G198350 NA non-coding downstream 31030 18416102 ~ 18416635 (+)
G198356 LOC108410782,LOC107698976,LOC107670023,LOC107555956,LOC107722163 non-coding downstream 108545 18493617 ~ 18536671 (+)
G198362 NA non-coding downstream 190156 18575228 ~ 18578290 (+)
G198368 NA non-coding downstream 215333 18600405 ~ 18600625 (+)
LOC111195522 LOC107679107,LOC107679108 other upstream 1954093 16424617 ~ 16430534 (+)
c23h5orf49 cunh5orf49,LOC103039620 other upstream 1991129 16388808 ~ 16393498 (+)
atat1 atat1 other upstream 2024959 16345117 ~ 16359668 (+)
ppp1r11 ppp1r11,LOC107694341 other upstream 2054387 16321942 ~ 16330240 (+)
LOC103030137 prrc2a,LOC101471845,LOC102784426,LOC102311189 other upstream 2594773 15761923 ~ 15789854 (+)
G198397 NA other downstream 473460 18858532 ~ 18863366 (+)
G198400 NA other downstream 502397 18887469 ~ 18891614 (+)
ppp1r10 ppp1r10,LOC107745712,LOC107687078,LOC107691520,LOC107709274 other downstream 719335 19104407 ~ 19116302 (+)
LOC103045134 khdrbs1,LOC103045134,LOC107691518,LOC101482948,LOC102791371,LOC107709277,LOC107584277 other downstream 781274 19166346 ~ 19182478 (+)
G198535 NA other downstream 820005 19205077 ~ 19205658 (+)

Expression


Co-expression Network