G198350


Basic Information

Item Value
gene id G198350
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 18416102 ~ 18416635 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU269311
ggcagcaggtgctggagctggagctggggcagcaggtgctggagctggagctgaggcagcaggtgctggagctggagctgaggcagcaggtgctggagctggagctgaggcagcaggtgctggagctggagctgaggcagcaggtgctggagctggagctgaggcagcaggtgctggagctggagctgaggcagcaggtgctggagctggagctggggcagcaggtgctggagctggagctggggcagcaggtgctggagctggagctggggcagcaggtgctggagctgaggctgaggcagcaggtgctggagctgaggctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU269311 True 323 lncRNA 0.68 2 18416102 18416635

Neighbor

gene id symbol gene type direction distance location
smap2 smap2 coding upstream 288581 18103816 ~ 18127521 (+)
col16a1 col16a1 coding upstream 353235 17934693 ~ 18062867 (+)
adgrb2 adgrb2,LOC107722142 coding upstream 586225 17294891 ~ 17829877 (+)
med10 med10,LOC107595625,LOC107691542,LOC106588698 coding upstream 1714855 16695596 ~ 16701247 (+)
nsun2 nsun2,LOC107694333,LOC107691499,LOC107711338 coding upstream 1782650 16599287 ~ 16633452 (+)
LOC103029482 LOC103029482 coding downstream 433892 18850527 ~ 18851285 (+)
pip4p2 tmem55a,LOC107724355,LOC107696196,LOC107702130 coding downstream 489951 18906586 ~ 18924321 (+)
tmem64 tmem64,LOC107696193,LOC107584320 coding downstream 582739 18999374 ~ 19011467 (+)
bag6 bag6,bag6l coding downstream 631305 19047940 ~ 19067708 (+)
abcf1 abcf1,LOC107745711 coding downstream 662450 19079085 ~ 19100818 (+)
G198337 NA non-coding upstream 95532 18320111 ~ 18320570 (+)
G198304 NA non-coding upstream 256494 18159396 ~ 18159608 (+)
G198283 NA non-coding upstream 299003 18116714 ~ 18117099 (+)
G198172 NA non-coding upstream 1151963 17259200 ~ 17264139 (+)
G198173 NA non-coding upstream 1174543 17233876 ~ 17241559 (+)
G198356 LOC108410782,LOC107698976,LOC107670023,LOC107555956,LOC107722163 non-coding downstream 76982 18493617 ~ 18536671 (+)
G198362 NA non-coding downstream 158593 18575228 ~ 18578290 (+)
G198368 NA non-coding downstream 183770 18600405 ~ 18600625 (+)
G198374 NA non-coding downstream 192929 18609564 ~ 18610085 (+)
LOC111195524 NA non-coding downstream 194124 18610759 ~ 18622911 (+)
G198344 NA other upstream 31030 18384627 ~ 18385072 (+)
LOC111195522 LOC107679107,LOC107679108 other upstream 1985568 16424617 ~ 16430534 (+)
c23h5orf49 cunh5orf49,LOC103039620 other upstream 2022604 16388808 ~ 16393498 (+)
atat1 atat1 other upstream 2056434 16345117 ~ 16359668 (+)
ppp1r11 ppp1r11,LOC107694341 other upstream 2085862 16321942 ~ 16330240 (+)
G198397 NA other downstream 441897 18858532 ~ 18863366 (+)
G198400 NA other downstream 470834 18887469 ~ 18891614 (+)
ppp1r10 ppp1r10,LOC107745712,LOC107687078,LOC107691520,LOC107709274 other downstream 687772 19104407 ~ 19116302 (+)
LOC103045134 khdrbs1,LOC103045134,LOC107691518,LOC101482948,LOC102791371,LOC107709277,LOC107584277 other downstream 749711 19166346 ~ 19182478 (+)
G198535 NA other downstream 788442 19205077 ~ 19205658 (+)

Expression


Co-expression Network