G198468


Basic Information

Item Value
gene id G198468
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035919.1
NCBI id CM008322.1
chromosome length 38085671
location 19072800 ~ 19073616 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU269513
GTTCTTTACAAAAAATCGAGGAAGctCATTTCTAAGTCTTTCACACATAAGAGAGAGTTTTTCCTCATTTTCCATGTCTCTCTCACTGGGAACTCTGTCCATACCTTCTGTCTCTGCATGACTGCACAGAGAGGTAGAGGATATTAGAGAGCAGGCTTGCTCTTCATGTTCAATCCTCAACCTATCTCCAGCCACATGCACAGGCTCCATTGGAGGACAGTGAAAGCAATAAAAATGAGAGCCCAAAATGAACGGAGCTGGACATCCTTCAGTCTCAAAAAAACTCCTGAACGAGCCTCTCTCCCTCTGCTCGAACCCTTTCTCAGTCCAAGGCACTCCGATAATGCTAATGTCATCTTCTCTCCTCCCGTCAACAGTTGTTAATGGGAAAACAAAGTCAGTAGGCTTGCTGGTTTGCAAATTCAGGTAATCTCCCAACTTAACTTGGCCAAACAGGGGCACCTCAACCAGGGTGTGCTGCTCATCTGTCTCGTTGGGTTTGAAAAGCACACAGAGGCTAAGGGTCTCCTCAAATTCTCCTTCTAGCCTGTGTGCTCTGTCGCTGAGTGGCTGGCAGGCATGGTGGAAGGGATGAGAAAGGGACGTTTTCTTAACAGATTGATAACGTAGACTGTTCGGGGGTGCCAAAGCCCAAGATGCGCTGCTGAGGACTCTACAGGGGTCATTCAAGTGTGAGTCAACTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU269513 True 705 lncRNA 0.48 2 19072800 19073616

Neighbor

gene id symbol gene type direction distance location
bag6 bag6,bag6l coding upstream 5092 19047940 ~ 19067708 (+)
tmem64 tmem64,LOC107696193,LOC107584320 coding upstream 61333 18999374 ~ 19011467 (+)
pip4p2 tmem55a,LOC107724355,LOC107696196,LOC107702130 coding upstream 148479 18906586 ~ 18924321 (+)
LOC103029482 LOC103029482 coding upstream 221515 18850527 ~ 18851285 (+)
smap2 smap2 coding upstream 945279 18103816 ~ 18127521 (+)
abcf1 abcf1,LOC107745711 coding downstream 5469 19079085 ~ 19100818 (+)
LOC103043003 agr2,LOC108433813,LOC107584355,LOC107745729,LOC107687097,LOC107562756,LOC107709281 coding downstream 51664 19125280 ~ 19128032 (+)
kpna6 kpna6,LOC107584279,LOC107745716,LOC107562870 coding downstream 566051 19639667 ~ 19659293 (+)
txlna txlna,LOC108433836,LOC107709285,LOC107687085,LOC107562872,LOC107576061 coding downstream 586830 19660446 ~ 19671216 (+)
eif3i eif3i,LOC107687089,LOC107745717 coding downstream 601510 19675126 ~ 19681146 (+)
G198378 thsd7a,LOC108410784,LOC104968073,LOC103477695 non-coding upstream 420006 18651980 ~ 18652794 (+)
LOC111195524 NA non-coding upstream 449889 18610759 ~ 18622911 (+)
G198374 NA non-coding upstream 462715 18609564 ~ 18610085 (+)
G198368 NA non-coding upstream 472175 18600405 ~ 18600625 (+)
G198362 NA non-coding upstream 494510 18575228 ~ 18578290 (+)
G198537 NA non-coding downstream 138379 19211995 ~ 19212328 (+)
G198584 NA non-coding downstream 397743 19471359 ~ 19471750 (+)
G198588 NA non-coding downstream 413324 19486940 ~ 19490316 (+)
G198603 NA non-coding downstream 609085 19682701 ~ 19719993 (+)
G198604 NA non-coding downstream 622887 19696503 ~ 19699096 (+)
G198400 NA other upstream 181186 18887469 ~ 18891614 (+)
G198397 NA other upstream 209434 18858532 ~ 18863366 (+)
G198344 NA other upstream 687728 18384627 ~ 18385072 (+)
LOC111195522 LOC107679107,LOC107679108 other upstream 2642266 16424617 ~ 16430534 (+)
c23h5orf49 cunh5orf49,LOC103039620 other upstream 2679302 16388808 ~ 16393498 (+)
ppp1r10 ppp1r10,LOC107745712,LOC107687078,LOC107691520,LOC107709274 other downstream 30791 19104407 ~ 19116302 (+)
LOC103045134 khdrbs1,LOC103045134,LOC107691518,LOC101482948,LOC102791371,LOC107709277,LOC107584277 other downstream 92730 19166346 ~ 19182478 (+)
G198535 NA other downstream 131461 19205077 ~ 19205658 (+)
G198540 NA other downstream 173356 19246972 ~ 19247396 (+)
fndc5 fndc5b,LOC108433842,LOC108272379,LOC107691512,LOC107584283,LOC107687074 other downstream 979412 20053028 ~ 20088987 (+)

Expression


Co-expression Network